Abundance Of Synechococcus Research Articles

Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site.

High-throughput sequencing of ocean biomes has revealed vast eukaryotic microbial diversity, a significant proportion of which remains uncharacterized. Here we use a temporal approach to understanding eukaryotic diversity at the Scripps Pier, La Jolla, California, USA, via high-throughput amplicon sequencing of the 18S rRNA gene, the abundances of both Synechococcus and Synechococcus grazers, and traditional oceanographic parameters. We also exploit our ability to track operational taxonomic units (OTUs) temporally to evaluate the ability of 18S sequence-based OTU assignments to meaningfully reflect ecological dynamics. The eukaryotic community is highly dynamic in terms of both species richness and composition, although proportional representation of higher-order taxa remains fairly consistent over time. Synechococcus abundance fluctuates throughout the year. OTUs unique to dates of Synechococcus blooms and crashes or enriched in Synechococcus addition incubation experiments suggest that the prasinophyte Tetraselmis sp. and Gymnodinium-like dinoflagellates are likely Synechococcus grazers under certain conditions, and may play an important role in their population fluctuations.

Prokaryotic picoplankton distribution within the oxygen minimum zone of the central Mexican Pacific across environmental gradients

Abstract Marine picophytoplankton has become an important issue to understand the global ecology of phototrophic forms, due to its wide distribution and contribution to biomass and productivity. We studied the abundance, distribution and signature pigments of the prokaryote picophytoplankters Prochlorococcus and Synechococcus during an oceanographic cruise (26 April to 7 May, 2011) in the central Mexican Pacific, a relatively poorly-known oxygen minimum zone (OMZ), and the effect of three environmental gradients. Prochlorococcus and Synechococcus abundances were comparable with those found in other tropical areas (0.17 to 30.37 X 104 cells mL-1, and 0.9 to 30.97 X 104 cells mL-1, respectively). Prochlorococcus abundances reached highest numbers in deeper waters, often coinciding with the second deep in situ fluorescence (and chlorophyll α) maxima, at oceanic stations, below the nitratecline, whereas Synechococcus abundances were higher at subsurface waters and its concentration maxima usually coincided with the subsurface in situ fluorescence maxima, with slightly higher abundances in coastal stations. Statistical analyses support significantly these results. Distribution of divinyl-chlorophyll α was erratic along the water column and occasionally coincided with the deep in situ fluorescence maxima, whereas the distribution of zeaxanthin usually followed that of chlorophyll α and the abundances of Synechococcus, and peaked together. These results are similar to those previously found in the study area and in more temperate zones, and also to the general trend in OMZ, but confirm that the second deep chlorophyll α maxima are attributed to high Prochlorococcus densities. We additionally found the abundance and distribution of Prochlorococcus and Synechococcus strongly driven by the environmental gradients observed.

Different impact of nanoflagellate grazing and viral lysis on Synechococcus spp. and picoeukaryotic mortality in coastal waters

Flow cytometry was used to follow the diel variations in abundance of Synechococcus spp. and picoeukaryotes in subtropical western Pacific coastal waters in June 2017. A modified dilution method was also used to estimate diel changes in the effect of nanoflagellate and viruses on Synechococcus spp. and picoeukaryotes. Obvious diel patterns were found in changes in abundance in both Synechococcus spp. and picoeukaryotes, the highest values recorded at night. Synechococcus spp. and picoeukaryotic growth decreased significantly in more highly diluted samples incubated during the daytime, suggesting that picophytoplankton production is partially dependent on grazing- and virus-mediated nutrient cycling during the daytime. At nighttime, nanoflagellate grazing and viral lysis were responsible for Synechococcus spp. mortality at rates of 0.02 h−1 and 0.04 h−1, respectively, and nanoflagellate grazing was responsible for all picoeukaryotic mortality. The most important finding of this study was that nanoflagellate grazing exerts great control over picoeukaryotes at night in these subtropical western Pacific coastal waters.

Responses of the picophytoplankton community to temperature fronts in the northeastern Arabian Sea during the northeast monsoon

We investigated the responses of the picophytoplankton (< 3 µm) community to a temperature filament and front through high resolution spatial (~ 1 NM) sampling (November-23 to December-11, 2012) in the northeastern Arabian Sea (69°E, 18.85°N to 20.25°N). Samples were collected at discrete depths within the 100 m water column. Synechococcus dominated the picophytoplankton community numerically and in terms of biomass along the entire transect. To investigate the patterns of variability in picophytoplankton distribution, depending on the water mass characteristics, the entire transect was divided into four zones (1) south of filament (SFIL) with warm oligotrophic waters, (2) filament (FIL) with cooler and low saline waters, (3) north of filament (NFIL) with relatively cooler waters than the SFIL and (4) front (FRO) with relatively cooler and less saline waters than the FIL. Depth-integrated abundance and biomass of Synechococcus were relatively higher within the FIL and FRO whereas Prochlorococcus and picoeukaryotes were abundant in SFIL and NFIL. Redundancy analysis of environmental variables and picophytoplankton abundance showed that lower saline water mass within the mesoscale features harbored relatively higher Synechococcus abundance and biomass. Two Synechococcus ecotypes were distinguished based on the fluorescence intensity of the accessory pigment, phycoerythrin; the one with higher intensity (open ocean ecotype) dominating in the FIL and the other with lower intensity in the FRO (coastal ecotype). The relatively lower saline surface water mass at the FRO, probably a result of coastal advection, could have introduced the latter ecotype. Vertically, a positive correlation of Prochlorococcus with nutrients and Synechococcus with temperature corroborates their higher and lower abundance and biomass, respectively in the deeper waters. The positive correlation of Synechococcus with the total chlorophyll biomass indicates a similar response to environmental variables within the mesoscale features. This study shows that picophytoplankton contribution (16–24%) to the total phytoplankton carbon biomass in tropical mesoscale features is likely to have important consequences on the planktonic food web function.

PAHs sensitivity of picophytoplankton populations in the Red Sea

In this study, we investigated the in situ responses of Red Sea picophytoplankton, the dominant phytoplankton group in the oligotrophic ocean, to two toxic polycyclic aromatic hydrocarbons (PAHs), phenanthrene and pyrene. The experiments were conducted across a latitudinal gradient of the Saudi Arabian Red Sea, an area sensitive to oil pollution. We observed significant adverse effects on the growth and abundance of the picocyanobacteria Synechococcus and picoeukaryotes, at all stations sampled. Prochlorococcus, which was abundant only at one of the stations, also appeared to be affected. Pyrene was found to be more toxic to phytoplankton at all stations. In general, picoeukaryotes exhibited higher sensitivity to PAHs than Synechococcus. Populations in the highly oligotrophic Northern region of the Red Sea were more tolerant to PAHs, presumably influenced by the natural selection of more resistant strains of phytoplankton due to the prolonged exposure to PAHs. Toxicity threshold values estimated here are higher than those reported for picophytoplankton from other oligotrophic marine waters and exceed by far the natural levels of PAHs in many oceans. Our findings reveal a possible adaptation of picophytoplankton populations to oil-related contaminants, which may clearly influence their spatial distribution patterns in the Red Sea.

Picoplankton distribution influenced by thermohaline circulation in the southern Adriatic

In this study, we focus on the interactive dynamics between physico-chemical processes and picoplankton distribution in order to advance our current understanding of the roles of various parameters in regulating picoplankton community structure in highly dynamic marine system such as the South Adriatic Sea. The research was carried out between October 2011 and September 2012 along the transect in the northern part of the South Adriatic Pit. The deep water convection occurred in the southern Adriatic during February 2012, with vertical mixing reaching the depth of 500 m. The picoplankton community was highly affected by this mixing event, whilst its compartments each responded differently. During deep water convection low nucleic acid heterotrophic bacteria (LNA HB) and Synechococcus had their lowest abundances (4 × 105 cell ml−1 and 8 × 102 cell ml−1, respectively), picoeucaryotes had their highest abundances (104 cell ml−1), while Prochlorococcus was absent from the area, most likely due to intense cooling and vertical mixing. In March 2012 Eastern Adriatic Current (EAC) brought warm and saline water with more nutrients, which resulted in the proliferation of high nucleic acid heterotrophic bacteria (HNA HB), having maximal abundance (4 × 105 cell ml−1). The re-establishment of Levantine Intermediate Water (LIW) intrusion after the deep water convection resulted in the re-appearance of Prochlorococcus and maximal abundances of Synechococcus (4 × 104 cell ml−1) in May 2012. The distribution of picoheterotrophs was mainly explained by the season, while the distribution of picophytoplankton was explained by the depth. Aside from nutrients, salinity was an important parameter, affecting particularly Prochlorococcus. The re-appearance of Prochlorococcus in the southern Adriatic during the period of LIW intrusion, together with their correlation with salinity, indicates their potential association with LIW. The relationship between Prochloroccocus distribution and physico-chemical environmental parameters provides an important insight into the ecological roles and niche preferences of this group.

Evaluation of the relationship of picoplankton and viruses to environmental variables in a lagoon system (Çakalburnu Lagoon, Turkey)

ABSTRACTLagoons are defined as wetlands separated from the sea coasts on which they are located and sit between continental and marine aquatic ecosystems. Çakalburnu Lagoon is a coastal wetland on the southern side of the Bay of İzmir. Microorganisms, which are quite sensitive to changes occurring in environmental factors, are commonly used to determine the impact of environmental effects on the functioning of the ecosystem. In this study, variations in the abundance and biomass of picoplankton (Synechococcus spp. and bacteria) and the abundance of viruses, which identify the ecological productivity of the food chain, were seasonally examined by epifluorescence microscopy. Moreover, the microbial abundance and biomass relation over time between the physical and chemical parameters was evaluated. According to our results, the maximum abundance of Synechococcus spp. and viruses was 6.7 × 104 cell/ml and 9.9 × 108 cell/ml in the summer, respectively. Otherwise, the highest level of bacteria was measured at 3.6 × 107 cell/ml in the spring. Based on the principal component analysis and Pearson correlation analysis results, we concluded that total suspended solids, Chl-a, particulate organic carbon and particulate organic nitrogen were the major parameters influencing the observed variability of the lagoon system. Overall, to protect and improve the ecological and microbiological quality of aquatic systems such as lagoons, the necessary monitoring and measurement studies should be conducted in these sensitive areas.

Picophytoplankton variability: Influence of winter convective mixing and advection in the northeastern Arabian Sea

Abstract The deepening of mixed layer and ensuing changes in optical and physicochemical properties of euphotic zone can influence phytoplankton community dynamics in the northeastern Arabian Sea during winter monsoon. The response of picophytoplankton community to such changes during winter convective mixing is not well understood. Herein, we have compared variations in the picophytoplankton community structure during early (November–December 2012), peak (end-January 2014) and late (mid-February 2015) winter monsoon from three separate cruises in the southern northeastern Arabian Sea. The higher Synechococcus abundance owing to entrainment of nutrients in mixed layer was observed during peak winter monsoon, while the concomitant changes in nitrate concentration, light and oxygen environment restricted Prochlorococcus growth resulting in lower abundance during the same period. This highlights the diverse responses of picophytoplankton groups to physicochemical changes of water column during winter convective mixing. The divinyl chlorophyll b/a ratio (marker for Prochlorococcus ecotypes) indicated prevalence of one low-light adapted ecotype (sensitive to light shock) in sub-surface water, one high-light adapted ecotype in surface water during early winter monsoon and both disappeared during intense mixing period in peak winter monsoon. Subsequently, a distinct low-light adapted ecotype, capable to tolerate light shock, was noticed during late winter monsoon and we argue that this ecotype is introduced to southern northeastern Arabian Sea through advection from north by sub-surface circulation. The total picophytoplankton biomass available to microbial loop is restored during late winter monsoon, when stratification begins, with a higher abundance of Synechococcus and the re-occurrence of Prochlorococcus population in the region. These inferences indicate that variability in picophytoplankton community structure and their contribution to the microbial loop are driven by convective mixing and advection, which in turn influence ecosystem functioning and trophodynamics of the southern northeastern Arabian Sea.

Variability of ultraplankton composition and distribution in an oligotrophic coastal ecosystem of the NW Mediterranean Sea derived from a two-year survey at the single cell level.

Ultraplankton [heterotrophic prokaryotes and ultraphytoplankton (<10 μm)] were monitored weekly over two years (2009 & 2010) in a coastal area of the NW Mediterranean Sea. Six clusters were differentiated by flow cytometry on the basis of their optical properties, two heterotrophic prokaryote (HP) subgroups labelled LNA and HNA (low and high nucleic acid content respectively), Prochlorococcus, Synechococcus, autotrophic picoeukaryotes and nanoeukaryotes. HP represented an important component of the microbial assemblage over the survey with relatively small abundance variation through seasons. The carbon biomass ratio HP/ultraphytoplankton averaged 0.45, however this ratio exceeded 1 during spring. Ultraphytoplankton biomass made about 50% of the total autotrophic carbon estimates but this contribution increased up to 97% and 67% during the 2009 and 2010 spring periods respectively. Within ultraphytoplankton, nanoeukaryote represent the most important ultraphytoplankton group in terms of autotrophic carbon biomass (up to 70%). Picoeukaryote maximum abundance occurred in winter. Synechococcus was the most abundant population (maximum 1.2 x 10 5 cells cm-3) particularly in spring where it represented up to 54% of ultraphytoplankton carbon biomass. The warmer winter-spring temperatures and the lengthening of the stratification period created a favorable situation for the earlier appearance of Synechococcus and its persistence throughout summer, paralleling Prochlorococcus development. Prochlorococcus was dominant over summer and autumn with concentrations up to 1.0 × 10 5 cells cm-3. While the abundance of Synechococcus throughout survey was of the same order as that reported in western Mediterranean Sea, Prochlorococcus was more abundant and similar to the more typical oligotrophic and warm waters. The abundance variation of the ultraplankton components through the survey was relatable to variations in the hydrological and nutrient conditions.

Community Structure of Microorganisms and Its Seasonal Variation in Beihai Lake

Water samples were collected in summer, autumn, winter, and spring in Beihai Lake for the analysis of water quality and microbial community structure. It was found that the water quality in summer and autumn was worse than in winter and spring, and TN and TP were the most important factors affecting the water quality. The microbial community structure was investigated using MiSeq high-throughput sequencing. It was found that the phyla Cyanobacteria, Proteobacteria, Actinobacteria, and Bacteroidetes were abundant in all the samples, whereas their relative abundances differed among the four seasons. In summer and autumn, the microbial diversities were higher, and the phylum Cyanobacteria was most abundant, with the genus Synechococcus dominant. In winter, the phylum Proteobacteria was dominant. In spring, Actinobacteria and Bacteroidetes were abundant, accounting for 51.5%-64.3% of the bacterial community. The redundancy analysis (RDA) results showed that the microbial communities were mostly affected by water temperature in Beihai Lake. Overall, the water quality of Beihai Lake was qualified for the use of landscape water. However, the abundance of Synechococcus in summer may lead to algal blooms. Thus, it is necessary to strengthen the monitoring and estimation of water quality in Beihai Lake.

Synechococcus Assemblages across the Salinity Gradient in a Salt Wedge Estuary.

Synechococcus are the most abundant and widely distributed picocyanobacteria in the ocean. The salt-wedge type of estuary possesses the complete horizontal and vertical gradient of salinity together with other physical and chemical parameters. In order to reveal whether such a complex environmental gradient harbors a high diversity of Synechococcus, we investigated the abundance, taxonomic composition and pigment genetic diversity of Synechococcus in surface and bottom waters across the salinity gradient in a salt-wedge estuary by flow cytometric analysis and pyrosequencing of the rpoC1 gene and cpcBA operon (encoding phycocyanin). Synechococcus were ubiquitously distributed in the studied region, with clear spatial variations both horizontally and vertically. The abundance and diversity of Synechococcus were low in the freshwater-dominated low salinity waters. By pyrosequencing of the rpoC1 gene, we have shown that with the increase of salinity, the dominant Synechococcus shifted from the freshwater Synechococcus to the combination of phylogenetic subcluster 5.2 and freshwater Synechococcus, and then the strictly marine subcluster 5.1 clade III. Besides, the composition of Synechococcus assemblage in the deep layer was markedly different from the surface in the stratified waters (dissimilarities: 40.32%-95.97%, SIMPER analysis). High abundance of clade III Synechococcus found in the brackish waters may revise our previous understanding that strains of this clade prefers oligotrophic environment. Our data also suggested that both the phylogenetic subcluster 5.3 Synechococcus, a lineage that was not well understood, and subcluster 5.1 clade I, a typical cold water lineage, were widely distributed in the bottom layer of the estuary. Clade I detected in the studied region was mainly contributed by subclade IG. Analysis of the cpcBA operon sequences revealed niche partitioning between type 1 and type 3 Synechococcus, with type 2 distributed broadly across the whole environmental gradients. Our results suggest that the salt wedge estuary provides various niches for different lineages of Synechococcus, making it an environment with high Synechococcus diversity compared with adjacent freshwater and shelf sea environments.

Seasonal variation in the copepod gut microbiome in the subtropical North Atlantic Ocean.

Characterisation of marine copepod gut microbiome composition and its variability provides information on function of marine food webs, biogeochemical cycles and copepod health. Copepod gut microbiomes were investigated quarterly over two years at the Bermuda Atlantic Time-series Station in the North Atlantic Subtropical Gyre, while assessing seasonal shifts in stable and transient communities. Microbial communities were analysed using amplicon sequencing targeting the bacterial 16S rRNA V3-V4 region and the cyanobacterial ntcA gene. Persistent bacterial groups belonging to Firmicutes, Bacteroidetes and Actinobacteria were present in the copepod guts throughout the year, and showed synchronous changes, suggesting a link to variability in copepod nutritional content. The gut communities were separate from those in the seawater, suggesting the copepod gut hosts long-term, specialized communities. Major temporal variations in the gut communities during the early winter and spring, specifically a high relative abundance of Synechococcus (up to 65%), were attributed to bacterioplankton shifts in the water column, and copepod grazing on these picoplanktonic cyanobacteria. The presence of obligate and facultative anaerobes, including Clostridiales year round, suggests that anaerobic bacterial processes are common in these dynamic microhabitats in the oligotrophic open ocean.

Saharan Dust Deposition Effects on the Microbial Food Web in the Eastern Mediterranean: A Study Based on a Mesocosm Experiment

The effect of episodicity of Saharan dust deposition on the pelagic microbial food web was studied in the oligotrophic Eastern Mediterranean by means of a mesocosm experiment in May 2014. Two different treatments in triplicates (addition of natural Saharan dust in a single-strong pulse or in three smaller consecutive doses of the same total quantity), and three unamended controls were employed; chemical and biological parameters were measured during a 10-day experiment. Temporal changes in primary (PP) and bacterial (BP) production, chlorophyll a (Chla) concentration and heterotrophic bacteria, Synechococcus and mesozooplankton abundance were studied. The results suggested that the auto- and hetero-trophic components of the food web (at least the prokaryotes) were enhanced by the dust addition (and by the nitrogen and phosphorus added through dust). Furthermore, a 1-day delay was observed for PP, BP and Chla increases when dust was added in three daily doses; however, the maximal values attained were similar in the two treatments. Although the effect was evident in the first osmotrophic level (phytoplankton and bacteria), it was lost further up the food web, masked under the impact of grazing exerted by predators such as heterotrophic flagellates, ciliates and dinoflagellates. This was partly proved by two dilution experiments. This study demonstrates the important role of atmospheric deposition and protist grazing when evaluating the effect on oligotrophic systems characterised by increased numbers of trophic levels.

Assessing ultraphytoplankton and heterotrophic prokaryote composition by flow cytometry in a Mediterranean lagoon

In the eutrophic Ghar El Melh Lagoon (GML, Tunisia), the distribution of heterotrophic prokaryotes, pico- and nanophytoplankton was studied at five stations in November 2012 at the single cell level, along with environmental factors. Flow cytometry analysis of ultraplankton (<10μm) resolved (i) two heterotrophic prokaryote groups, low and high nucleic acid contents (LNA and HNA, respectively), and (ii) eight to nine ultraphytoplankton groups (cryptophyte-like cells, two nanoeukaryote subgroups, two picoeukaryote subgroups and three Synechococcus-like cells subgroups). Prochlorococcus was not detected. According to redundancy analysis (RDA), a significant difference was found in the distribution of the ultraplankton between stations (F=2.61, p<0.05); maximum proliferations of heterotrophic prokaryotes were observed in the inner parts of the lagoon at stations 3, 4 and 5 affected by urban, agricultural and industrial discharges. Ultraphytoplankton concentrations were the highest near the outlet of the lagoon at stations 1 and 2 influenced by freshwater outflow and oligotrophic Mediterranean water inflow, respectively. At station 1, the large ultraphytoplankton concentration derives from the high abundance of cryptophyte-like cells favoured by the freshwater outflow whereas at station 2, the input of oligotrophic Mediterranean water enhanced the abundance of Synechococcus and picoeukaryotes at the expense of nanoeukaryotes. Two trophic regimes were thus differentiated in GML.

Growth and mortality rates of prokaryotes in the hypolimnion of a deep freshwater lake (Lake Biwa, Japan)

The presence of pico-sized cyanobacteria (genus Synechococcus) in hypolimnetic waters has been reported, and investigators have suggested that Synechococcus contribute more to ecological processes in the hypolimnion than previously hypothesized; however, the ecological role of Synechococcus in food webs and/or matter cycling in the hypolimnion remains unknown. To address this issue, we assessed protistan grazing and the virus-mediated mortality of Synechococcus in the oxygenated hypolimnion of a large freshwater lake (Lake Biwa, Japan) during the stratification period. In addition, we compared the carbon flux through mortality of Synechococcus to that of heterotrophic bacteria to evaluate the role of Synechococcus in ecological processes within a hypolimnetic ecosystem. Our results suggest that the biomass of Synechococcus and heterotrophic bacteria in the hypolimnion was removed primarily by protistan grazing. The abundance of Synechococcus was highest in August, when the average Synechococcus:bacteria carbon biomass and daily grazing loss ratios were 10.8% and 11.0%, respectively. Thus, the Synechococcus biomass is likely an important seasonal component of the carbon flux in the hypolimnetic microbial loop. Our results provide the first data on carbon flux through the mortality of both Synechococcus and bacteria in a hypolimnetic ecosystem.

Synechococcus production and grazing loss rates in nearshore tropical waters.

Temporal variation of Synechococcus, its production (μ) and grazing loss (g) rates were studied for 2years at nearshore stations, i.e. Port Dickson and Port Klang along the Straits of Malacca. Synechococcus abundance at Port Dickson (0.3-2.3×105 cell ml-1) was always higher than at Port Klang (0.3-7.1×104 cell ml-1) (p<0.001). μ ranged up to 0.98day-1 (0.51±0.29day-1), while g ranged from 0.02 to 0.31day-1 (0.15±0.07day-1) at Port Klang. At Port Dickson, μ and g averaged 0.47±0.13day-1 (0.29-0.82day-1) and 0.31±0.14day-1 (0.13-0.63day-1), respectively. Synechococcus abundance did not correlate with temperature (p>0.25), but nutrient and light availability were important factors for their distribution. The relationship was modelled as log Synechococcus=0.37Secchi-0.01DIN+4.52 where light availability (as Secchi disc depth) was a more important determinant. From a two-factorial experiment, nutrients were not significant for Synechococcus growth as in situ nutrient concentrations exceeded the threshold for saturated growth. However, light availability was important and elevated Synechococcus growth rates especially at Port Dickson (F=5.94, p<0.05). As for grazing loss rates, they were independent of either nutrients or light intensity (p>0.30). In nearshore tropical waters, an estimated 69% of Synechococcus production could be grazed.

Characteristics of picoplankton abundances during a Thalassiosira diporocyclus bloom in the Taiwan Bank in late winter

To understand the variations of picoplankton (Prochlorococcus, Synechococcus, picoeukaryotes, and heterotrophic bacteria) abundances during diatom bloom, the distribution of picoplankton in the Taiwan Bank, South China Sea was investigated using flow cytometry during a Thalassiosira diporocyclus bloom in March 2016. The results indicated an abrupt abundance decrease for Prochlorococcus, Synechococcus, and picoeukaryotes within the bloom area while the abundance of heterotrophic bacteria showed no significant difference between the bloom and non-bloom areas. We found two sub-groups of heterotrophic bacteria: high- and low-nucleic acid content (HNA and LNA) bacteria with HNA dominated in the bloom area whereas LNA dominated in the non-bloom area. Among the picoplankton components, HNA represented the highest (61.1%) carbon biomass in the bloom area while picoeukaryotes represented the highest (37.6%) in the non-bloom area. Our findings implied that heterotrophic bacteria, especially HNA, played an essential role during the diatom bloom.

Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern pacific ocean.

The widespread unicellular cyanobacteria Synechococcus are major contributors to global marine primary production. Here, we report their abundance, phylogenetic diversity (as assessed using the RNA polymerase gamma subunit gene rpoC1) and pigment diversity (as indirectly assessed using the laterally transferred cpeBA genes, encoding phycoerythrin-I) in surface waters of the northwestern Pacific Ocean, sampled over nine distinct cruises (2008-2015). Abundance of Synechococcus was low in the subarctic ocean and South China Sea, intermediate in the western subtropical Pacific Ocean, and the highest in the Japan and East China seas. Clades I and II were by far the most abundant Synechococcus lineages, the former dominating in temperate cold waters and the latter in (sub)tropical waters. Clades III and VI were also fairly abundant in warm waters, but with a narrower distribution than clade II. One type of chromatic acclimater (3dA) largely dominated the Synechococcus communities in the subarctic ocean, while another (3dB) and/or cells with a fixed high phycourobilin to phycoerythrobilin ratio (pigment type 3c) predominated at mid and low latitudes. Altogether, our results suggest that the variety of pigment content found in most Synechococcus clades considerably extends the niches that they can colonize and therefore the whole genus habitat.

The Potential Impact of Saharan Dust and Polluted Aerosols on Microbial Populations in the East Mediterranean Sea, an Overview of a Mesocosm Experimental Approach

Recent estimates of nutrient budgets for the Eastern Mediterranean Sea (EMS) indicate that atmospheric aerosols play a significant role as suppliers of macro- and micro- nutrients to its Low Nutrient Low Chlorophyll water. Here we present the first mesocosm experimental study that examines the overall response of the oligotrophic EMS surface mixed layer (Cretan Sea, May 2012) to two different types of natural aerosol additions, “pure” Saharan dust (SD, 1.6 mg l-1) and mixed aerosols (A - polluted and desert origin, 1 mg l-1). We describe the rationale, the experimental set-up, the chemical characteristics of the ambient water and aerosols and the relative maximal biological impacts that resulted from the added aerosols. The two treatments, run in triplicates (3 m3 each), were compared to control-unamended runs. Leaching of approximately 2.1-2.8 and 2.2-3.7 nmol PO4 and 20-26 and 53-55 nmol NOx was measured per each milligram of SD and A, respectively, representing an addition of approximately 30% of the ambient phosphate concentrations. The nitrate/phosphate ratios added in the A treatment were twice than those added in the SD treatment. Both types of dry aerosols triggered a positive change (25-600% normalized per 1 mg l-1 addition) in most of the rate and state variables that were measured: bacterial abundance (BA), bacterial production (BP), Synechococcus (Syn) abundance, chlorophyll-a (chl-a), primary production (PP) and dinitrogen fixation (N2-fix), with relative changes among them following the sequence BP>PP≈N2-fix>chl-a≈BA≈Syn. Our results show that the ‘polluted’ aerosols triggered a relatively larger biological change compared to the SD amendments (per a similar amount of mass addition), especially regarding BP and PP. We speculate that despite the co-limitation of P and N in the EMS, the additional N released by the A treatment may have triggered the relatively larger response in most of the rate and state variables as compared to SD. An implication of our study is that a warmer atmosphere in the future may increase dust emissions and influence the intensity and length of the already well stratified water column in the EMS and hence the impact of the aerosols as a significant external source of new nutrients.

Temporal and spatial variations of abundance of phycocyanin- and phycoerythrin-rich Synechococcus in Pearl River Estuary and adjacent coastal area

Three surveys were carried out in Pearl River Estuary and adjacent coastal area in May, August, and November, 2013, to investigate the temporal and spatial variations of abundance of phycoerythrin-rich Synechococcus (PE-rich SYN) and phycocyanin-rich Synechococcus (PC-rich SYN). The effects of environmental factors on the alternation of the different Synechococcus groups were also elucidated. PE-rich SYN was detected in three surveys, whereas PC-rich SYN was detected in May and August, but not in November. The highest abundances of PE-rich SYN and PC-rich SYN were recorded in August and May, with mean values of 74.17×103 and 189.92×103 cells mL−1, respectively. From May to November, the relative abundance of PE-rich SYN increased, whereas that of PC-rich SYN declined. PE-rich and PC-rich SYN presented similar horizontal distributions with high abundance in the southern estuary in May, and in the western estuary in August. The abundances of PE-rich and PC-rich SYN were high at 27–32°C and salinity of 10–20. PC-rich SYN was not detected at < 24°C, and PC:PE-rich SYN decreased in abundance with salinity increase. When less than 20 mg L−1, suspended particulate matter (SPM) was helpful for Synechococcus growth. PE-rich SYN decreased in abundance when the concentration of dissolved inorganic nitrogen increased in May and November, and the concentration of phosphate increased in November. However, PC-rich SYN abundance and nutrients showed no correlation. Principal component analysis and regression analysis indicated that PE-rich SYN significantly correlated with the principal components that were affected by environmental factors.