Abundance Of Nitrifying Bacteria Research Articles

Probing the microenvironment of freshwater sediment macrofauna: Implications of deposit‐feeding and bioirrigation for nitrogen cycling

The effect of sediment‐dwelling macrofauna on nitrifying bacteria was investigated by direct probing in their overlapping habitat, i.e., the upper few millimeters of freshwater sediments. Microsensors (O2, NH4+, NO3‐, and diffusivity) were used at the sediment surface and inside animal burrows to record steady‐state and dynamic distributions of reactants, respectively. Short‐term changes of metabolic activity (actual and potential nitrification rates) and long‐term changes of abundance (fluorescence in situ hybridization) of nitrifying bacteria were determined. The presence of insect larvae (Chironomus riparius) increased the availability of O2 and NO3‐ in the sediment pore water and inside animal burrows, suggesting promotion of nitrification and dissimilatory NO3‐ reduction, particularly in the burrowing layer of C. riparius. At the sediment surface (i.e., in the feeding layer of C. riparius), however, nitrification was inhibited by low NH4+ availability and high macrofaunal grazing pressure. Consequently, both actual and potential nitrification rates decreased in the feeding layer. Inside burrows, no net nitrification was detected, despite high NH4+ availability and frequent O2 injections by larval ventilation activity. Conversely, burrows were sites of NH4+ production and consumption. Nevertheless, the abundance of nitrifying bacteria increased measurably in the burrowing layer after prolonged incubation, but only in sediments in which the larvae were able to construct and ventilate stable burrows.

Respirometric Activities of Heterotrophic and Nitrifying Populations in Aerobic Granules Developed at Different Substrate N/COD Ratios

Aerobic granules were successfully developed at substrate N/COD ratios ranging from 5/100 to 30/100 by weight. By measuring respective respirometric activities of heterotrophic, ammonia-oxidizing, and nitrite-oxidizing bacteria, it was found that the relative abundance of nitrifying bacteria over heterotrophs in aerobic granules was closely related to the substrate N/COD ratios. Results further showed that the populations of both ammonia and nitrite oxidizers were significantly enriched with the increase of the substrate N/COD ratio, while a decreasing trend of heterotrophic population was observed in the aerobic granules. These seem to indicate that high substrate N/COD ratio favors the selection of nitrifying bacteria in the aerobic granules, while the relative activity of nitrifying population against heterotrophic population evolved until a balance between two populations was reached in the aerobic granular sludge community. Moreover, cell elemental composition was correlated with the shift in microbial populations, e.g., the enriched nitrifying population in the aerobic granules resulted in a high cell nitrogen content normalized to cell carbon content. This study provides a good insight into microbial interaction in aerobic granules.

In situ distribution and activity of nitrifying bacteria in freshwater sediment.

Nitrification was investigated in a model freshwater sediment by the combined use of microsensors and fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. In situ nitrification activity was restricted mainly to the upper 2 mm of the sediment and coincided with the maximum abundance of nitrifying bacteria, i.e. 1.5 x 107 cells cm-3 for ammonia-oxidizing Beta-proteobacteria (AOB) and 8.6 x 107 cells cm-3 for Nitrospira-like nitrite-oxidizing bacteria (NOB). Cell numbers of AOB decreased more rapidly with depth than numbers of NOB. For the first time, Nitrospira-like bacteria could be quantified and correlated with in situ nitrite oxidation rates in a sediment. Estimated cell-specific nitrite oxidation rates were 1.2-2.7 fmol NO2- cell-1 h-1.

Structure and activity of multiple nitrifying bacterial populations co-existing in a biofilm.

A biofilm from a nitrifying pilot-scale sequencing batch reactor was investigated for effects of varying process conditions on its microscale activity and structure. Microsensor measurements of oxygen, substrates and products of nitrification were applied under incubation at different ammonium and oxygen concentrations which reflected various situations during a treatment cycle. A high net N loss was observed under high ammonium (HA) concentrations in contrast to low ones. Additionally, results indicated inhibition of nitrite-oxidizing bacteria (NOB), but not of ammonia-oxidizing bacteria (AOB) by free ammonia under HA conditions. Diversity, spatial distribution, and abundance of nitrifying bacteria as analysed by fluorescence in situ hybridization (FISH) revealed six different nitrifying populations with heterogeneous distributions. Nitrosococcus mobilis formed conspicuous microcolonies locally surrounded by cells of the dominating N. europaea/eutropha-related AOB population. A third less abundant population was affiliated to N. oligotropha. Nitrite-oxidizing bacteria of the genera Nitrobacter and Nitrospira (with at least two distinct populations) showed a large scale heterogeneity in their distribution. Nitrospira spp. were also found in deeper inactive layers where they might persist rather than thrive, and act as seed population when detached. Results of functional and structural analyses are discussed with respect to specific niches of individual populations in this system.

Nitrification efficiency and nitrifying bacteria abundance in combined AS-RBC and A2O systems

This study makes a comparison between the nitrification performance of TNCU-I (a combined activated sludge-rotating biological contactor process) and A2O systems by the use of a pilot plant and batch experiments. The nitrifier abundance in both systems was determined, using cloning-denaturing gradient gel electrophoresis (DGGE) and fluorescent in-situ hybridization (FISH), to investigate the role of rotating biological contactor in the TNCU-I process. The stability of the nitrification performance and the specific nitrification rate were found to be greater in TNCU-I system than in the A2O system. RBC biofilm promoted nitrifying activity that contributed to the nitrification performance, especially at a low SRT. By using the cloning-DGGE method, the genera Nitrosospira and Nitrospira were found to be present in all the samples, while the genus Nitrosomonas was observed only in the TNCU-I RBC biofilm. In addition, the proportions of ammonia oxidizer in the TNCU-I RBC biofilm, the TNCU-I activated sludge and the A2O activated sludge were 11.4%, 13.2%, and 4.1%, respectively, higher than the nitrite oxidizer fractions of 3.3%, 5.7% and 2.1%, respectively, according to the cloning-DGGE method. On the other hand, the proportions of ammonia oxidizers in the afore-mention materials were 10.3%, 13.7%, and 5.2%, higher than the nitrite oxidizer fractions of 2.5%, 3.6% and 2.3%, according to the FISH experiments. This implies that the proportion of ammonia oxidizer in the TNCU-I process was 3.2 and 2.6 times that in the A2O process, determined by the cloning-DGGE and FISH methods, respectively. These amounts are also close to the ammonia oxidization rate of 2.9 times. All the data show that RBC added to the aerobic zone of TNCU-I process would increase the nitrifier abundance and enhance the nitrification performance of the system.

Evaluation of the impact of bioaugmentation and biostimulation by in situ hybridization and microelectrode

Three rotating disk biofilm reactors were operated to evaluate whether bioaugmentation and biostimulation can be used to improve the start-up of microbial nitrification. The first reactor was bioaugmented during start-up period with an enrichment culture of nitrifying bacteria, the second reactor received a synthetic medium containing NH 4 + and NO 2 − to facilitate concomitant proliferation of ammonia- and nitrite-oxidizing bacteria, and the third reactor was used as a control. To evaluate the effectiveness of bioaugmentation and biostimulation approaches, time-dependent developments of nitrifying bacterial community and in situ nitrifying activity in biofilms were monitored by fluorescence in situ hybridization (FISH) technique and microelectrode measurements of NH 4 +, NO 2 −, NO 3 −, and O 2. In situ hybridization results revealed that addition of the enrichment culture of nitrifying bacteria significantly facilitated development of dense nitrifying bacterial populations in the biofilm shortly after, which led to a rapid start-up and enhancement of in situ nitrification activity. The inoculated bacteria could proliferate and/or survive in the biofilm. In addition, the addition of nitrifying bacteria increased the abundance of nitrifying bacteria in the surface of the biofilm, resulting in the higher nitrification rate. On the other hand, the addition of 2.1 mM NO 2 − did not stimulate the growth of nitrite-oxidizing bacteria and did inhibit the proliferation of ammonia-oxidizing bacteria instead. Thus, the start-up of NO 2 − oxidation was unchanged, and the start-up of NH 4 + oxidation was delayed. In all the three biofilm reactors, data sets of time series analyses on population dynamics of nitrifying bacteria determined by FISH, in situ nitrifying activities determined by microelectrode measurements, and the reactor performances revealed an approximate agreement between the appearance of nitrifying bacteria and the initiation of nitrification activity, suggesting that the combination of these techniques was a very powerful monitoring tool to evaluate the effectiveness of bioaugmentation and biostimulation strategies.

Chemoautotrophic activity and nitrification in the oxygen minimum zone off Peru

The oxygen minimum zone off Peru is the site of intense nitrogen cycling, driven by the large input of organic material from highly productive overlying waters. Using three independent experimental methods, we assessed chemoautotrophic activity and nitrification rates in depth profiles through the oxygen gradient and minimum regions. Nitrifying bacteria (both ammonium and nitrite oxidizers) were present throughout the oxygen minimum zone. Even in very low oxygen waters, in situ chemoautotrophic activity and nitrogen oxidation were commonly detected. Highest abundance of nitrifying bacteria and highest activities were found in the gradient region at the upper boundary of the oxygen minimum. Due to the occurrence of strong minima and maxima in the distributions of many parameters, activities were not linearly correlated with environmental and chemical variables. The data are consistent with close coupling between nitrification and denitrification in the oxygen minimum zone, and rapid cycling of nitrogen cycle intermediates including nitrate, nitrite and nitrous oxide.

Distribution of autotrophic nitrifying bacteria in a polluted river (the Passaic).

The abundance of nitrifying bacteria, determined by most-probable-number procedures, within habitats of the Passaic River was as follows: rooted aquatic plants greater than algae approximately equal to rocks greater than sediments greater than greater than water. On the average, NH4+ oxidizers were 540-fold more abundant in the topmost 1 cm of sediment than in the water, and NO2- oxidizers were 250-fold more abundant. The population densities in this surface sediment at two nearby stations, one with a predominantly mineral stream bed and the other an organic ooze, did not differ significantly. Large numbers of nitrifiers were present to a depth of about 5 cm in a mineral sediment core.