Shifts in phytoplankton biodiversity drive frequent community successions within aquatic ecosystems. While significant progress has been made in understanding the factors influencing phytoplankton growth under controlled conditions, the processes driving phytoplankton succession in natural waters remain poorly understood. To address this gap, we conducted high-frequency monitoring of the phytoplankton community in the Jiangdong River Reservoir (Southeast China) from 2021 to 2022. High-frequency data captured 17 complete cycles of phytoplankton growth and decline. Our analysis showed that cryptophytes, though not the dominant group, played a key role in shaping the temporal dynamics of phytoplankton community structure and abundance. The relative abundance of cryptophytes consistently mirrored fluctuations in total chlorophyll-a concentrations. Rainfall-induced low-light conditions enhanced the competitive advantage of cryptophytes. Throughout each cycle of phytoplankton changes, cryptophytes leveraged this short-term advantage to proliferate by utilizing available ammonia nitrogen, ascending from the fourth to the second most abundant group. However, as ammonia nitrogen levels declined to 0.1 mg/L, cryptophyte populations began to decline. These new findings highlight the critical role of cryptophytes in driving phytoplankton succession patterns.
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