The logging intensity often does not take into account the spatial heterogeneity of the forest volume of commercial native species in the Brazilian Amazon. This study aims to evaluate the spatio-temporal heterogeneity distribution by assessing logging intensity and its effects on the volumetric stock and abundance of commercial species, with a focus on sustainable management practices. This study was conducted in the Saracá-Taquera National Forest in the Brazilian Amazon. Forest inventory data, elevation, and PlanetScope satellite images were integrated into a geographic information system. The information was aggregated into regular 1-hectare cells for the times before, during, and after logging (t0, t1, and t2). The unsupervised classification algorithm k-means with four clusters was used to analyze heterogeneity. Before logging, areas with higher commercial volumes were distant from water bodies, while areas with lower elevation had lower wood stocks. Logging intensity was generally low, concentrating on a few trees per hectare. Logging in the study area revealed a heterogeneous spatial distribution by intensifying in areas with the highest wood stocks. These results suggest that, in addition to the recommended logging intensity according to legislation, forest heterogeneity should be considered by the manager, promoting adaptive strategies to ensure the conservation of forest resources.