1. It is proposed that an appreciation of patterns of change and stability in macrophyte floras is an important tool for lake managers. 2. The presence and abundance of aquatic macrophytes was annually monitored (from 1983 to 1995) along permanent transects in 13 shallow lakes in the Broads wetland in eastern England, United Kingdom. 3. Cluster analysis (TWINSPAN) revealed three Broad Macrophyte Types (BMTs) or assemblages. Two of these were sub-divided into four and then again into six sub-types. BMT1 had a constant presence (i.e. in more than 60% of all samples) of charophytes, Potamogeton pectinatus L.,Myriophyllum spicatum L. and Najas marina L. BMT2 had a constant presence of Nuphar lutea (L.) Smith and filamentous algae. BMT3 consisted of sites without macrophytes. 4. The BMTs provided a useful regional classification for aquatic vegetation in shallow, calcareous, and slightly brackish lakes with relatively organic sediments. The BMTs were compared with national and international classifications. The value of BMTs as conservation targets was assessed. 5. Analysis of changes of macrophyte assemblages with time, using ordination (CANOCO) and time-series plots, revealed lakes with stable, drifting, or erratic and unstable macrophyte assemblages. 6. The method of presentation used facilitates the interpretation of year-to-year macrophyte changes. The implication is that management effort can be more effectively directed towards conservation targets. The effects of management on the aquatic flora, such as dredging and biomanipulation, were shown to be easily evaluated using Cockshoot Broad as an example. © 1998 John Wiley & Sons, Ltd.