Abundance Of Actinomycetes Research Articles

Evaluation of agricultural non-point source pollution infiltration on clogging and nitrogen leaching effects in BRCs with different plants in dryland areas

As high-standard farmland rapidly expands, agricultural non-point source pollution has emerged as a main environmental issue in China. To tackle nitrogen pollution, green infrastructure (GI), especially bioretention cells (BRCs), has been extensively adopted. However, the long-term effectiveness of these systems may be hindered by clogging and nitrogen leaching. In this study, we designed three BRCs simulation devices to investigate the effects of different plants on the removal of TSS TN and NO3–N from runoff through simulated pollutant infiltration experiments. To address this issue, laboratory research has explored the contributions of woody plants like Buxus and herbaceous plants such as Ophiopogon in BRCs, concentrating on their impact on system clogging and nitrogen leaching. The results indicated that, although the total suspended solids (TSS) removal rates in the Buxus and Ophiopogon treatment groups were slightly lower than in the control group, permeability experienced a notable enhancement, with the Buxus group showing a 24.47% increase in permeability. The removal rates of TN and NO3–N in the Buxus group were significantly reduced, decreasing by 31.82% and 41.25%, respectively, in comparison to the control group. After five months, Ophiopogon demonstrated considerably better root growth, with its root length, volume, and surface area all significantly exceeding those of the Buxus group. The choice of plants significantly influenced nitrogen cycling and system clogging, with the reduced removal rates in the Buxus group potentially linked to its weaker root system, lower abundance of actinomycetes, and reduced soil enzyme activity.

Effects of water immersion on immune, intestinal flora and metabolome of Chinese mitten crab (Eriocheir sinensis) after air exposure

Air exposure stress can induce stress response of Eriocheir sinensis and affect its normal life activities. The goal of this study was to investigate the effects of water immersion on the recovery of hepatopancreas immune-related enzyme activity, intestinal microbial diversity and metabolic level of Chinese mitten crabs after exposure to air. The results show that immersion can effectively alleviate the adverse effects of air exposure on the antioxidant capacity and immune capacity of Chinese mitten crabs, and the longer the time of immersion, the more obvious the recovery effect. Among them, the levels of aspartate aminotransferase, alanine aminotransferase, alkaline phosphatase and acid phosphatase significantly increased after exposure to air (P < 0.05), reached a peak at 3 h, began to decline after immersion, and returned to a level close to the initial value at 24 h (P < 0.05). In addition, after exposure to air, the glucose and total cholesterol in haemolymph of Eriocheir sinensis were significantly different from the initial values (P < 0.05), gradually recovered to the initial level after re-immersion. However, changes in intestinal flora and hepatopancreas metabolism caused by air exposure did not fully recover after water exposure, and its negative effects did not completely disappear. The sequencing results showed that the species composition and diversity of intestinal microorganisms of Chinese mitten crab changed after air exposure and immersion treatment. The relative abundance of Actinomycetes increased significantly, while that of Proteobacteria and Firmicutes decreased significantly. Metabolomics analysis showed that air exposure and immersion destroyed the metabolic balance of amino acids and carnitine, reduced the level of carnitine metabolism, hindered the absorption of nutrients, and led to the accumulation of harmful substances.

Spatial and temporal dynamics of microbes and genes in drinking water reservoirs: Distribution and potential for taste and odor generation

Numerous reservoirs encounter challenges related to taste and odor issues, often attributed to odorous compounds such as geosmin (GSM) and 2-methylisoborneol (2-MIB). In this study, two large reservoirs located in northern and southern China were investigated. The Jinpen (JP) reservoir had 45.99 % Actinomycetes and 14.82 % Cyanobacteria, while the Xikeng (XK) reservoir contained 37.55 % Actinomycetes and 48.27 % Cyanobacteria. Most of the 2-MIB produced in surface layers of the two reservoirs in summer originated from Cyanobacteria, most of the 2-MIB produced in winter and in the bottom water originated from Actinomycetes. Mic gene abundance in the XK reservoir reached 5.42 × 104 copies/L in winter. The abundance of GSM synthase was notably high in the bottom layer and sediment of both reservoirs, while 2-MIB synthase was abundant in the surface layer of the XK reservoir, echoing the patterns observed in mic gene abundance. The abundance of odor-producing enzymes in the two reservoirs was inhibited by total nitrogen, temperature significantly influenced Actinomycetes abundance in the JP reservoir, whereas dissolved oxygen had a greater impact in the XK reservoir. Overall, this study elucidates the molecular mechanisms underlying odor compounding, providing essential guidance for water quality management strategies and the improvement of urban water reservoir quality.

Impact of alternate partial root-zone irrigation on the rhizosphere microbiota of alfalfa plants inoculated with rhizobia.

Water is an important constraint on alfalfa (Medicago sativa) production in arid and semiarid areas, and alternate irrigation in root areas has water-saving potential for alfalfa production. To investigate the impact of alternate partial root-zone irrigation (APRI) on the rhizosphere soil microorganisms of alfalfa, this study subjected alfalfa plants to different irrigation methods and irrigation levels. The growth status and rhizosphere soil microbial community diversity of alfalfa plants under alternate root-zone watering treatment were analyzed through laboratory experiments and high-throughput sequencing. The results showed that at soil moisture levels of 80% field moisture capacity (FMC) and 60% FMC, APRI had no significant impact on the biomass or nodule number of alfalfa. However, 40% FMC significantly reduced the individual plant dry weight, chlorophyll content, and nodule number of the alfalfa plants. APRI increased the relative abundance of Actinomycetes in the alfalfa rhizosphere soil. Moreover, at 60% FMC, the MBC and MBN of rhizosphere, relative abundance of Actinobacteria and unclassified K fungi and Chao 1 index of bacteria significantly increased under APRI treatment. While relative abundance of Ascomycetes and Proteobacteria in the alfalfa rhizosphere significantly reduced under 60% FMC + APRI treatment. In summary, under the same irrigation conditions, APRI did not significantly affect the growth of alfalfa in the short term. And 60%FMC + APRI treatment did significantly affect the groups, structure and diversity of the rhizosphere soil microbial communities.

Phosphorous Fractions in Soils of Natural Shrub-Grass Communities and Leucaena leucocephala Plantations in a Dry-Hot Valley

Afforestation is an effective approach for restoring degraded ecological functions in the dry-hot valleys of southwest China. Afforestation can affect soil carbon and nitrogen storage; however, how it affects soil P fractions, and their driving factors. is poorly understood in this region. To address these questions, we conducted a field study of Leucaena leucocephala plantations at three different stand age sites (3, 10, and 20 years) and an adjacent natural shrub-grass community control site to investigate changes in soil total phosphorus (Pt), Pi (inorganic phosphorus), Po (organic phosphorus), and phosphorus (P) fractions and their driving factors. Soil Pt, Po, labile P, and moderately labile P significantly increased in the Leucaena leucocephala plantation compared with the natural shrub grass site, and the Leucaena leucocephala plantation increased soil Pt content by significantly increasing soil Po. Soil Pt, Po, Pi, labile P, moderately labile P and non-labile P were not significantly different among the different stages of the Leucaena leucocephala plantation, and soil Pt and its fractions were all significantly higher in the middle-age forest stage of the Leucaena leucocephala plantation. These results indicate that Leucaena leucocephala plantations increased the soil P transformation ability, and soil Po played a critical role in sustaining soil P availability. The middle-age forest stage of Leucaena leucocephala plantations had the best conditions for P stocks and P conversion capacity. The abundance of actinomycetes and fungi showed significant positive relationships with soil Pi fractions (NaHCO3-Pi, NaOH-Pi, and NaOHu.s.-Pi); soil Pt and moderately labile P were significantly and directly influenced by fungal abundance. Soil organic carbon (SOC), NH4+-N, and NO3−-N showed significant and positive relationships with the soil Pi fractions (NaHCO3-Pi, NaHCO3-Po, and HCl-Po). SOC and NO3−-N were the key drivers of soil Pt, labile P, moderately labile P and non-labile fractions. These results indicate that abiotic and biotic factors differently affected the soil P fractions and Pt in Leucaena leucocephala plantations in the dry-hot valley.

Meta-analysis of plant restoration impacts on soil microbial community structure in mining areas

Mining causes severe damage to soil ecosystems. Vegetation restoration in abandoned mine areas is an inevitable requirement for sustainable development. Soil microbes, as the most active component of soil organic matter, play a crucial role in the transformation of carbon, nitrogen, phosphorus, and other elements. They are often used as indicators to assess the extent of vegetation restoration in ecologically fragile areas. However, the impacts of vegetation restoration on soil microbial community structure in mining areas at the global scale remains largely unknown. Based on 310 paired observations from 44 papers, we employed the meta-analysis approach to examine the influence of vegetation restoration on soil microbial abundance and biomass in mining area. The results indicated that vegetation restoration significantly promotes soil microbial biomass in mining areas. In comparison to bare soil, vegetation restoration leads to a significant 95.1% increase in soil microbial biomass carbon and a 87.8% increase in soil microbial biomass nitrogen. The abundance of soil bacteria, fungi, and actinomycetes are significantly increased by 1005.4%, 472.4%, and 177.7%, respectively. Among various vegetation restoration types, the exclusive plan-ting of trees exhibits the most pronounced promotion effect on soil microbial biomass and population, which results in a significant increase of 540.3% in soil fungi and 104.5% in actinomycetes, along with a respective enhancement of 110.3% and 106.4% in microbial biomass carbon and nitrogen. Model selection results revealed that soil satura-ted water content and vegetation restoration history contribute most significantly to the abundance of soil bacteria and fungi. Soil available nitrogen has the most significant impact on the abundance of actinomycetes and microbial biomass carbon, while soil available phosphorus emerges as a crucial factor affecting microbial biomass nitrogen. This research could contribute to understanding the relationship between vegetation restoration and the structure of soil microbial communities in mining areas, and providing scientific support for determining appropriate vegetation restoration types in mining areas.

Enhancing Native Plant Establishment in Mine Tailings under Drought Stress Conditions through the Application of Organo-Mineral Amendments and Microbial Inoculants

The implementation of phytoremediation strategies under arid and semiarid climates requires the use of appropriate plant species capable of withstanding multiple abiotic stresses. In this study, we assessed the combined effects of organo-mineral amendments and microbial inoculants on the chemical and biological properties of mine tailings, as well as on the growth of native plant species under drought stress conditions. Plants were cultivated in pots containing 1 kg of a mixture of mine tailings and topsoil (i.e., pre-mined superficial soil) in a 60:40 ratio, 6% marble sludge, and 10% sheep manure. Moreover, a consortium of four drought-resistant plant growth-promoting rhizobacteria (PGPR) was inoculated. Three irrigation levels were applied: well-watered, moderate water deficit, and severe water deficit, corresponding to 80%, 45%, and 30% of field capacity, respectively. The addition of topsoil and organo-mineral amendments to mine tailings significantly improved their chemical and biological properties, which were further enhanced by bacterial inoculation and plants’ establishment. Water stress negatively impacted enzymatic activities in amended tailings, resulting in a significant decrease in acid and alkaline phosphatases, urease, and dehydrogenase activities. Similar results were obtained for bacteria, fungi, and actinomycete abundance. PGPR inoculation positively influenced the availability of phosphorus, total nitrogen, and organic carbon, while it increased alkaline phosphatase, urease (by about 10%), and dehydrogenase activity (by 50%). The rhizosphere of Peganum harmala showed the highest enzymatic activity and number of culturable microorganisms, especially in inoculated treatments. Severe water deficit negatively affected plant growth, leading to a 40% reduction in the shoot biomass of both Atriplex halimus and Pennisetum setaceum compared to well-watered plants. P. harmala showed greater tolerance to water stress, evidenced by lower decreases observed in root and shoot length and dry weight compared to well-watered plants. The use of bioinoculants mitigated the negative effects of drought on P. harmala shoot biomass, resulting in an increase of up to 75% in the aerial biomass in plants exposed to severe water deficit. In conclusion, the results suggest that the combination of organo-mineral amendments, PGPR inoculation, and P. harmala represents a promising approach to enhance the phytoremediation of metal-polluted soils under semiarid conditions.

Characteristics of bacterial community in eyelashes of patients with Demodex blepharitis

BackgroundDemodex blepharitis (DB) is a common disease of the ocular surface. The characteristics of the bacterial community in eyelash roots after Demodex infestation are still unknown. Knowledge of the characteristics of the bacterial community of eyelash follicles in patients with DB can provide valuable insights for guiding the diagnosis and treatment of DB.MethodsTwenty-five patients with DB (DB group) and 21 non-DB volunteers (control group) were enrolled in the study. Eyelashes from the upper eyelid of the right eye were sampled, and 16S ribosomal DNA (rDNA) sequencing was performed to determine the V3-V4 regions of the microbial 16S rDNA gene within 1 month of infestation. The sequencing data of the two groups were analyzed and compared. The effect of the bacterium Burkholderia on the survival of Demodex mites was evaluated using Demodex obtained from 12 patients with DB other that the patients in the DB group.ResultsA total of 31 phyla and 862 genera were identified in the DB and control groups. The five most abundant phyla in the two groups were Proteobacteria, Firmicutes, Actinobacteria, Bacteroidetes and Cyanobacteria. The abundance of Actinomycetes was significantly higher in the DB group than in the control group. At the genus level, the five most abundant genera in the two groups were Pseudomonas, Burkholderia-Caballeronia-Paraburkholderia, Rolstonia and Acinetobacter; Clostridium sensu stricto 1 was abundant in the control group and Corynebacterium_1 was abundant in the DB group. Compared with the control group, the abundance of Burkholderia-Caballeronia-Paraburkholderia was 2.36-fold lower in the DB group. Linear discriminant analysis Effect Size (LEfSe) analysis revealed Burkholderia-Caballeronia-Paraburkholderia, SC_I_84_unclassified, Nonmyxobacteria and Succinvibrio to be the major biomarkers in the control group and Catenibacterium and Lachnospiraceae NK4A136 group to be the major biomarkers in the DB group. To explore the performance of these optimal marker models, receiver operational characteristic curve analysis was performed, and the average area under the curve value of Burkholderia-Caballeronia-Paraburkholderia was 0.7448. Burkholderia cepacia isolated from normal human eyelashes was fermented, and the Demodex mites isolated from patient eyelashes were cultured together with its fermented supernatant. The results showed that the fermentation supernatant could significantly reduce the survival time of the Demodex mites, suggesting the potential therapeutic value of this bacterium against Demodex.ConclusionsThe composition of the bacterial community in the eyelashes of DB patients differed from that in eyelashes of healthy volunteers, revealing a decrease in bacterial diversity in infested eyelashes. This decrease may be related to the occurrence and development of DB. The supernatant of Burkholderia cepacia culture medium was found to inhibit the growth of Demodex in eyelash hair follicles, providing a new insight with potential applications for the clinical treatment of Demodex infestation.Graphical

Application of Arabidopsis thaliana in the Remediation of Soil Pollution : Evidence from the Earthworm-Microbe-Arabidopsis System

ABSTRACT Presence of cadmium in soil affects the growth status of plants; research on the underlying mechanism has focused on its lethal and sublethal consequences in plants, ignoring the impacts of soil organisms. Therefore, this study designed a microorganism – earthworm – plant ecosystem, investigated the influence of Cd (0, 0.3, 1.0, and 3.0 mg kg−1) on the growth of Arabidopsis thaliana in the presence of earthworms (Eisenia fetida), and revealed the mechanisms from the perspective of altered relationships among different soil organisms. In this study, there was no significant difference in the death rate of earthworms with low Cd addition concentration, but the microorganisms in earthworms and soil microorganisms changed, abundance of Actinomycetes in soil increased, while Planctomycetes decreased, Mycobacterium in the gut of Eisenia fetida decreased under Cd stress. Microorganisms affect soil pH, which in turn affects soil physicochemical properties and the form of cadmium in soil. Compared with the control, soil pH significantly decreases under cadmium stress, Under 0.3 mg kg−1 treatment, soil total nitrogen, available phosphorus and total potassium are 181.11, 5.09, 51.90, and 7.55 mg kg−1, respectively, They were significantly higher than control group. Improved the growth environment of Arabidopsis thaliana and promoted the absorption of Cd in soil which affected the proportion of available Cd in the soil (when Cd was added at 1.0 mg kg−1, the proportion of available Cd in the soil decreased significantly from 95.05% to 49.40%). A. thaliana also absorbed more Cd, which increased Cd toxicity, and the reproductive growth of A. thaliana was enhanced, while vegetative growth was weakened.Compared with the control group (278.11 mg), the biomass of A. thaliana decreased significantly to 189.83 mg when Cd was supplemented at 0.3 mg kg−1. Therefore, the activities of and interactions among earthworms, plants, and microorganisms play important roles in reducing soil heavy metals and improving soil properties.

Evaluation of Microbiological and Chemical Properties of Soils as a Result of Anthropogenic Denudation

Excessive agricultural intensification adversely affects soil quality, particularly in hilly terrain, leading to increased erosion. Anthropogenic denudation, intensified by tillage erosion, results in the displacement of soil material from hilltops and shoulders to their bases. The research hypothesis posits that tillage erosion adversely affects the microbiological and chemical properties of soils, especially at the hilltops of intensively cultivated areas. The study aimed to assess the microbiological and chemical properties of Luvisols cultivated under conventional plowing in the moraine region of the Southern Krajna Lakeland, Poland. The evaluation focused on the results of soil sample analyses taken from the hilltops and foothills of eroded mounds. Microbiological investigations included determining the abundance of actinomycetes, filamentous fungi, heterotrophic bacteria, cellulolytic microorganisms, copiotrophs, and oligotrophs. Additionally, pH values and the contents of phosphorus, potassium, magnesium, total organic carbon, and nitrogen were determined. A higher abundance of bacteria, actinomycetes, and copiotrophs was observed at the foothills. Statistically significant differences due to slope effects were noted for all chemical parameters, with higher concentrations of organic carbon, nitrogen, potassium, and phosphorus found in the foothill areas. Understanding denudation processes can contribute to sustainable soil resource use and agrocenosis conservation.

Effects of dietary N-carbamylglutamate supplementation on the modulation of microbiota and Th17/Treg balance-related immune signaling after lipopolysaccharide challenge.

This study aimed to evaluate the effects of N-carbamylglutamate (NCG) on piglets' growth performance and immune response, and to unravel the mechanisms of such effects. In a 2 × 2 factorial design including diet (with or without NCG) and immunological challenge (saline or lipopolysaccharide (LPS)), 24 piglets were randomly distributed into four groups. After being fed a basic diet or a NCG-supplemented diet for 21 days, piglets were administered LPS or saline intraperitoneally. The results showed that NCG increased the average daily gain and average daily feed intake, and the feed conversion ratio of piglets, and alleviated the adverse effects of LPS stimulation on intestinal morphology. At the phylum level, NCG reversed the increase in the abundance of Firmicutes and the reduction in that of Actinomycete caused by LPS stimulation. At the genus level, NCG increased the abundance of Lactobacillus, Blautia, norank_Butyricicoccaceae, Subdoligranulum, and Ruminococcus_gauvreauii_group, and LPS decreased the abundance of Escherichia-Shigella and Ruminococcus_gauvreauii_group. The short-chain fatty acid content was increased by NCG, but LPS reduced its content. N-Carbamylglutamate also inhibited significantly the LPS-induced increase in the relative expression of signal transducer and activator of transcription (STAT) 3, related orphan receptor (RAR) c, and pro-inflammatory cytokines, and the decrease in the relative expression of STAT5, forkhead box P3, IL-10 and transforming growth factor beta 1 mRNA. A significant correlation was found between intestinal microbiota and inflammatory cytokines and short-chain fatty acids. N-Carbamylglutamate can improve piglets' growth performance. It can also attenuate LPS-induced intestinal inflammation by modulating microbiota and Th17/Treg balance-related immune signaling pathways. © 2023 Society of Chemical Industry.

Effects of antibiotics (enrofloxacin) on microbial community of water and sediment in an aquatic ecological model.

In order to explore the impact of antibiotics (enrofloxacin) on microbial community in aquatic environment, an indoor aquatic ecological model was built, and different concentrations of enrofloxacin (0.05, 0.5, 5, and 50 mg/L) were added in the aquatic ecological model. In addition, the water and sediment samples were collected on the 0, 7, 30, and 60 days, and the changes in microbial community were studied through 16S rDNA high-throughput sequencing. The results showed that when the concentration of enrofloxacin was 50 mg/L, the relative abundance of Actinomycetes was increased. In the water, the bacterial richness and diversity communities first decreased and then gradually recovered with the passage of time; On the 7th day, the diversity and richness index of species in the treatment groups with enrofloxacin at 5 and 50 mg/L decreased to the lowest; On the 30th day, the diversity and richness index of species began to rise; On the 60th day, the diversity index and richness index of water species began to increase, while the diversity index and richness index of sediment species decreased. In conclusion, the addition of enrofloxacin negatively affected the microbial community structure in an indoor aquatic ecological model, 50 mg/L enrofloxacin could increase the relative abundance of Actinomycetes, and decrease the diversity and richness index of water and sediment.

Divergent effects of short-term warming on microbial resource limitation between topsoil and subsoil in a young subtropical Chinese fir forest

Microbes depolymerize soil organic matter to supply themselves with carbon (C), and nutrients such as nitrogen (N) and phosphorus (P). In this way, microbial resource limitations play an important role in characterizing the biogeochemical cycle dynamics of the ecosystem. However, the effect of warming on microbial resource limitations, especially in resource-poor subsoils, remains unclear. Therefore, this study aimed to examine the effects of warming (+ 5 °C above ambient) on microbial resource limitation and explored their relationships with soil physicochemical properties and microbial community structure in topsoil (0–10 cm) and subsoil (40–60 cm) in a Chinese fir (Cunninghamia lanceolata) plantation in southern China. Microbial resource limitation with warming treatment was assessed via vector analysis of soil extracellular enzymatic stoichiometry after two years. We found warming aggravated microbial C limitation in the topsoil but alleviated microbial C limitation in the subsoil, while it shifted the relative nutrient limitation from P limitation to N limitation in the subsoil. Soil microbial C limitation was explained by soil properties (specifically, ammonium nitrogen) in the topsoil while by microbial community composition in the subsoil based on variance partition analysis. The soil microbial nutrient limitation was explained by soil properties in the topsoil and subsoil. The decrease in actinomycetes abundance in the warming treatment may have led to a decreased microbial C limitation in the subsoil. Our study highlighted the differences in warming effects between the topsoil and subsoil. We argue that the microbial resource demand of the subsoil should be further implemented in the study of soil biogeochemistry to improve the prediction of the impact of climate warming on soil C dynamics.

Chromium exposure altered metabolome and microbiome-associated with neurotoxicity in zebrafish.

In recent years, chromium (Cr) has been found to induce neurotoxicity. However, the underlying mechanism remains unclear. This study aimed to investigate the effects of chromium exposure on the metabolome and microbiome that may contribute to neurotoxicity in juvenile zebrafish. Zebrafish embryos were exposed to 1mg/L Cr (III) and 1mg/L Cr (VI) for 7 days, respectively. Swimming distance and locomotor behavior was decreased, and acetylcholinesterase activity was reduced in Cr-exposed groups. Total cholesterol levels were decreased in Cr-exposed groups. The differential-expressed metabolites due to Cr exposure were mainly enriched in primary bile acid biosynthesis, which indicated that Cr exposure may promote cholesterol conversion. The abundance of Bacteroidetes decreased and the abundance of Actinomycetes increased in Cr-exposed groups, as compared with that in the control group. At the genus level, the abundance of Acinetobacter, Acidophorax, Mycobacterium, Aeromonas, Hydrophagophaga, and Brevundimonas increased, whereas Chryseobacterium, Pseudomonas, Delftia, and Ancylobacter decreased in the Cr-exposed groups. Analysis of the correlation between gut microbiota and bile acid metabolites showed that changes of gut microbial community due to Cr exposure may be related to secondary bile acid metabolism. Collectively, chromium exposure may disturb cholesterol metabolism, including primary bile acid and microbiota-related secondary bile acid metabolism. This study provides potential mechanism of the effects of chromium on neurotoxicity based on modulation of metabolome and gut microbiota diversity, which needs further verification.

Effects of biochar and vermicompost on microorganisms and enzymatic activities in greenhouse soil

The effects of different contents of biochar and vermicompost on the microbial and enzymatic activities of greenhouse soil were determined to provide a theoretical basis for improving the quality of greenhouse soil. The experiment was conducted in a greenhouse using potted tomatoes. Five treatments consisted of different amount ratios of organic amendments: 1% biochar (BC1), 3% biochar (BC3), 5% biochar (BC5), 3% vermicompost (VC3), and 5% vermicompost (VC5), with no addition of organic amendments as the control (CK). Compared with CK, the pH, organic matter content, and DOC concentration increased in treatment groups. The organic matter content of BC3 and BC5 significantly increased by 54.6% and 72.8%, respectively, and DOC concentration of BC3 significantly increased by 43.9%. Biochar and vermicompost significantly increased the diversity of bacterial and fungal communities in soil, as well as the abundance of Actinomycetes, Acidobacteria, Ascomycetes, and Aspergillus, and reduced the abundance of Aspergillus. The activities of urease and alkaline phosphatase were significantly increased, and the activity of nitrate reductase was inhibited in all treatment groups compared with CK. In addition, a highly significant positive correlation was observed among pH, Acidobacteria phylum abundance, and alkaline phosphatase activity in all treatments. DOC concentration was positively correlated with pH, organic matter content, Acidobacteria phylum abundance and alkaline phosphatase activity. Biochar and vermicompost were effective in improving the physicochemical properties of greenhouse soil, enhancing microbial diversity, and affecting enzymatic activities. Therefore, BC3 (3% biochar) had the most significant effect on community diversity and alkaline phosphatase and nitrate reductase activities. VC5 (5% vermicompost) had the best promotion effect on urease activity. This study highlights that biochar and vermicompost as organic amendments are recommended to improve the quality of greenhouse soils.

Synergistic effect of polysaccharides and flavonoids on lipid and gut microbiota in hyperlipidemic rats.

Hyperlipidemia is a global health risk factor, and its development is closely related to the absorption and metabolism of lipids in the intestine. In this study, the Auricularia auricula polysaccharide, the Tremella polysaccharide, and hawthorn flavonoids were mixed by equal weight (HDC), and then its effect on the intervention in the intestine and blood lipids of hyperlipidemic rats on a high-fat diet (HFD) was investigated. The results revealed that HDC significantly inhibited the development of hyperlipidemia and reduced lipid levels and fat accumulation. In addition, HDC improved the edema deformation of intestinal epithelial cells, impaired the intestinal barrier induced by HFD, and improved the antioxidant capacity of the intestine. HDC showed a significant synergistic effect. Analysis of the gut microbiota by 16s rRNA gene sequencing showed that HDC reduced the ratio of Bacteroidetes/Firmicutes and the relative abundance of actinomycetes. At the genus level, the relative abundance of Lactobacillus, Rumincococcaceae-UCG-14, and Muribaculaceae was increased and the relative abundance of Allobaculum, Corynebacterium-1, Blautia, and Turicibucter was decreased. Intestinal lipidomics showed that HDC reduced the levels of DGDG, LPE, PG, phSM, PIP2, SoG1, and SM in the intestine of HFD rats, although there were no significant differences in LPE, PG, and phSM. 42 HDC-acting lipid biomarkers were screened. In conclusion, these findings support the potential of HDC intervention to prevent hyperlipidemia by regulating gut microbiota and lipid absorption and metabolism in the intestine.

Soil Actinomycetes of Vietnam Tropical Forests

Actinomycetes are an important group of bioactive hydrolytic bacteria in any ecosystem. However, the actinomycete biodiversity in tropical ecosystems, particularly in Vietnam, is still underexplored. The aim of this article is to analyze the abundance, taxonomic structure and ecophysiological features of actinomycete complexes of soils and litter in Vietnam’s protected areas. A total of 41 samples of soils, plant litter and suspended soils were collected from six of Vietnam’s national parks and nature reserves. The direct inoculation technique showed that the total abundance of actinomycetes varied from 2.0 × 104 to 1.0 × 108 CFU/g. According to the luminescent microscopy with acridine orange dye, the length of the actinomycete mycelium was as long as 1000 m/g in the litter of Xuan Son National Park. A total of 80 strains were isolated and tested for antagonistic activity against Bacillus subtilis, Aspergillus niger and Candida albicans. Inoculation on Getchinson’s medium showed high cellulolytic activity. The most active strains were isolated from alluvial brown soil, plant litter and suspended soil of the Pu Hoat Nature Reserve. In these samples, actinomycetes adapted to high temperatures and low pH were found to be predominant. High-throughput sequencing of the V3–V4 region of the 16S rRNA gene and bioinformatic analysis confirmed the high taxonomic diversity and high hydrolytic activity of actinomycete complexes of the Pu Hoat Nature Reserve samples.

Correlations between gastrointestinal and oral microbiota in children with cerebral palsy and epilepsy.

We here studied the correlation between gut and oral microbiota in children with cerebral palsy and Epilepsy (CPE). We enrolled 27 children with this condition from the social welfare center of Longgang District, collected their oral plaque and stool samples, and analyzed their gut microbiota (GM) and oral microbiota (OM) through 16S rRNA gene sequencing. Taxonomical annotation revealed that the levels of Firmicutes and Bacteroides in the oral cavity were significantly lower in CPE children than in healthy children, whereas the abundance of Actinomycetes increased significantly in CPE children. In addition, Prevotella, Fusobacterium, and Neisseria were the top three abundant genera, representing 15.49%, 9.34%, and 7.68% of the OM and suggesting potential correlations with caries, periodontitis, and malnutrition. For the GM, Bifidobacterium, Bacteroides, and Prevotella were the top three abundant genera in CPE children and probably contributed to the development of chronic inflammation and malnutrition. Furthermore, the OM and GM correlated with each other closely, and the bacterial components of these microbiota in CPE children were remarkably different from those in healthy children, such as Bifidobacterium, Fusobacterium, Bacteroides, and Neisseria. Conclusively, dysbiotic OM can translocate to the intestinal tract and induce GM dysbiosis, suggesting the consistency between OM and GM variations. Altered oral and gut microbial structures have potential impacts on the occurrence of clinical diseases such as periodontitis, caries, and malnutrition.

Linking microbial community compositions to cotton nitrogen utilization along soil salinity gradients

Accumulating evidence has shown that soil salinization is a global threat to microbial functional diversity and crop growth. However, the effects of microorganisms on crop growth, yield components, and nitrogen (N) utilization under salt stress are poorly understood. In this research, 16S rRNA, quantitative polymerase chain reaction (qPCR) sequencing, and 15 N isotopic tracer method were used to identify associations between microbial community composition and cotton N utilization across four salinity gradients (control, 0–2 dS m −1 ; low-salinity, 2–4 dS m −1 ; mid-salinity, 4–8 dS m −1 ; and high-salinity, 8–15 dS m −1 ). These findings indicate d that salinity is the primary driving force behind environmental degradation. Furthermore, the results showed that the effect of microbial community diversity on cotton 15 N utilization was regulated by soil electrical conductivity. The promotional effect of Proteobacteria on cotton 15 N utilization was gradually enhanced with increasing soil salinity, while the relative abundance of Actinomycetes first showed an increasing trend after which it decreased. The present study confirms that Actinobacteria dwelling in arid areas are capable of growing under selective soil salinity gradients. This study highlights the importance of focusing on microbial community diversity for cotton growth and yield, and for the first time to clarifying the differences in cotton N utilization under different soil salinity gradients in arid areas. In addition, the association between edaphic properties and cotton parts (rhizospheres, stems, leaves, and fruits) was evaluated more in-depth using the mediating and moderating effects model in the present study. Further investigations are required to ascertain whether salt-tolerant bacterial communities in the rhizosphere can be isolated to promote N utilization by cotton. • Soil salinization is the primary driving force for environmental degradation. • Soil salinity levels regulated the effect of the bacterial community on cotton N uptake. • Cotton N uptake was limited when the soil electrical conductivity exceeded 6.3 dS cm −1 . • Actinobacteria dwelling was capable of growing under selective soil salinity.

Impact of Petroleum Contamination on the Structure of Saline Soil Bacterial Communities.

Petroleum contamination may lead to variations in soil microbial community structure and activities. The bioremediation of petroleum-contaminated soil typically depends on the characteristics and activities of oil-degrading microorganisms, which can be introduced or be part of the native soil microbiota. Thus, analyzing the structure of the microbial community and internal relationships in the bioremediation process is critical. Our study characterized the physical and chemical properties, microbial community structure, and microbial diversity of surface soil collected near an oilfield. The total carbon (TC), total organic carbon (TOC), and microbial diversity in oil-contaminated soil was found higher than in uncontaminated samples. Proteobacteria abundance was inhibited with oil pollution, while Actinomycetes abundance was enhanced. Some indigenous hydrocarbon-degrading bactera were enriched by oil pollution, such as Bacillus, Actinomarinales norank, Balneolaceae uncultured, Marinobacter, and Pseudomonas. Furthermore, Rokubacteria, Nitrospirae, and Entotheonellaeota were significant differences in the contaminated group. There were 16 genera with significant differences in the polluted group, such as Woeseia, Pelagibius, Pontibacillus, IS_44, Aliifodinibius, while Halothiobacillus, Algoriphagus, Novosphingobium, etc. had significant differences in the uncontaminated group. Redundancy analysis demonstrated that the responses of the microorganisms to the evaluated environmental factors were different, and TC was the most important driver of microbial community variation. Moreover, TOC was the largest contributor to operational taxonomic unit (OTU) and Chao index variations. Our results provide a theoretical basis for the enhancement of microbial activity in oil-contaminated soil, which might improve bioremediation efficacy.