Summer Abundance Research Articles

Anthropogenic pollution drives the bacterial resistome in a complex freshwater ecosystem

Aquatic ecosystems in anthropogenically impacted areas are important reservoirs of antibiotic resistance genes (ARGs) of allochthonous origin. However, the dynamics of the different ARGs within the bacterial communities of lakes and rivers, as well as the factors that drive their selection, are not completely understood. In this study, we analysed the fate of the bacterial resistome (total content of ARGs and of metal resistance genes, MRGs) for a period of six months (summer-winter) in a continuum lake-river-lake system (Lake Varese, River Bardello, Lake Maggiore) in Northern Italy, by shotgun metagenomics. The metagenomic data were then compared with chemical, physical and microbiological data, to infer the role of anthropogenic pressure in the different sampling stations. ARGs and MRGs were more abundant and diverse in the River Bardello, characterised by the highest anthropogenic pollution. The date of sampling influenced ARGs and MRGs, with higher abundances in summer (August) than in fall or in winter, when the impact of the treated wastewater discharge in the river was limited by a higher water flow from Lake Varese. ARG and MRG abundances were significantly correlated and they co-occurred in the main network analysis modules with potential pathogenic bacteria. Different levels of anthropogenic impact selectively promoted specific ARGs while others, generally abundant in waters, were not affected by anthropogenic pressure. Reducing the level of anthropogenic pressure resulted in a rapid decrease of most ARGs. From our results, the role of anthropogenic pressure in promoting the spread of specific antibiotic resistances and of potential pathogens in aquatic ecosystem becomes clear. Finally we highlight the strict correlation between ARGs and MRGs suggesting their potential co-selection in stressed aquatic bacterial communities.

Holoplankton and meroplankton communities in surf zone waters of a temperate SW Atlantic sandy beach: Seasonal patterns

AbstractSandy beaches and their associated surf zones are the most common type of open shoreline, with significant ecological and socio‐economic importance. In this study, we explored the seasonal fluctuations of the surf zone holo‐ and meroplankton communities to understand the underlying environmental variables driving the temporal dynamics of each community. We also defined a surf‐zooplankton community on a temperate sandy beach (Monte Hermoso, Argentina) and related the organisms to those reported in a nearby estuary for a better understanding of the connection between adjacent coastal ecosystems. Holoplankton was very abundant (13.52–11070.4 ind m−3) and showed a strong seasonality, mainly related to the specific pattern of the two most abundant species: Acartia tonsa (>autumn) and Paracalanus parvus (>winter). This community was affected by seasonal changes in water temperature and salinity and variations in the velocity of currents, which showed that hydrodynamic forces were more significant on a short‐term time scale than seasonal ones. Meroplankton abundances (1.3–48.05 ind m−3) were significantly lower than those recorded for the holoplankton and were mainly dominated by Medusae and larvae of Bivalvia and Decapoda. This fraction also showed a clear seasonal pattern (>abundances in summer), primarily related to the seasonal changes in temperature. The abundances of the main surf‐zooplanktonic taxa were high and constant, emphasizing the importance of these waters as habitats for well‐established communities rather than being used as a transient area. Consequently, we proposed a “specific” surf‐zooplankton community for a temperate sandy beach, considering resident and non‐resident taxa. Finally, the comparison of the surf and estuarine communities indicated a faunal relationship between seascapes, highlighting the ecological role of coastal waters in planktonic life.

Spatio-temporal Characteristics of Organic Aggregates and the Driving Factors in Typical Lakes

Organic aggregates (OA) are the important circulation hub of matter and energy in aquatic ecosystems. However, the comparison studies on OA in lakes with different nutrient levels are limited. In this study, spatio-temporal abundances of OA and OA-attached bacteria (OAB) in oligotrophic Lake Fuxian, mesotrophic Lake Tianmu, middle-eutrophic Lake Taihu, and hyper-eutrophic Lake Xingyun were investigated in different seasons during 2019-2021 using a scanning electron microscope, epi-fluorescence microscope, and flow cytometry. The results showed that:① the annual average abundances of OA in Lake Fuxian, Lake Tianmu, Lake Taihu, and Lake Xingyun were 1.4×104, 7.0×104, 27.7×104, and 16.0×104 ind·mL-1, whereas the annual average abundances of OAB in the four lakes were 0.3×106, 1.9×106, 4.9×106, and 6.2×106 cells·mL-1. The ratios of OAB:total bacteria (TB) in the four lakes were 30%, 31%, 50%, and 38%, respectively. ② OA abundance in summer was significantly higher than that in autumn and winter; however, the ratio of OAB:TB in summer was approximately 26%, which was significantly lower than that in the other three seasons. ③ Lake nutrient status was the most important environmental factor that affected the abundance variations of OA and OAB, accounting for 50% and 68% of the spatio-temporal variations in OA and OAB abundances. ④ Nutrient and organic matters were enriched in OA, especially in Lake Xingyun; the proportions of particle phosphorous, particle nitrogen, and organic matters in this lake were as high as 69%, 59%, and 79%, respectively. Under the circumstance of future climate change and the expansion of lake algal blooms, the effects of algal-originated OA in the degradation of organic matters and nutrient recycling would be increased.

Microplastics in Marine Sediments in Eastern Guangdong in the South China Sea: Factors Influencing the Seasonal and Spatial Variations

Little is known about the comprehensive factors influencing temporal changes in microplastic abundance in marine ecosystems. We investigated seasonal variations in the microplastic distribution in marine sediments in multiple-used zones of Eastern Guangdong in the South China Sea. The top 10 cm sediments from 26 sites were collected by grab sampling in the spring, summer, and winter of 2021. Marine sediments had the lowest microplastic abundance in summer, significantly lower than in other seasons. The size of microplastics varied from 22.5 to 4363.3 µm but the 50–200 µm range was the most abundant. Transparent and fragmented microplastics were the most frequently observed composition. Microplastic abundance negatively correlated to distance to the coast. However, seaweed ecosystems impacted microplastic abundance by changing the microenvironment and/or direct contact and entrapment. Microplastic abundance is closely related to coastal mariculture and local residential and industrial activities. Polypropylene, polypropylene-polyethylene copolymer, polyethylene terephthalate, and polyethylene were the most frequently detected compositions, probably from packaging materials, textiles, and electronic/electrical/building industries. This work helps to understand the role of multiple-used zones and their influence on microplastic distributions in marine ecosystems. Appropriate management of the use and disposal of plastic waste on land was recommended to alleviate microplastic pollution in the marine environment.

Interannual dynamics of putative parasites (Syndiniales Group II) in a coastal ecosystem.

Temporal dynamics of Syndiniales Group II were investigated combining 18S rDNA amplicon sequencing and direct microscopy counts (fluorescence in situ hybridization-tyramide signal amplification [FISH-TSA]) during 5 years. The study was undertaken in meso-eutrophic coastal ecosystem, dominated by diatoms, the haptophyte Phaeocystis globosa and exhibiting relatively low dinoflagellate abundance (max. 18.6 × 103 cells L-1 ). Consistent temporal patterns of Syndiniales Group II were observed over consecutive years highlighting the existence of local populations. According to sequencing data, Syndiniales Group II showed increasing abundance and richness in summer and autumn. Dinospores counted by microscopy, were present at low abundances and were punctuated by transient peaks. In summer dinospore highest abundance (559 × 103 L-1 ) and prevalence (38.5%) coincided with the peak abundance of the dinoflagellate Prorocentrum minimum (13 × 103 L-1 ) while in autumn Syndiniales Group II likely had more diversified hosts. Although, several peaks of dinospore and read abundances coincided, there was no consistent relation between them. Ecological assembly processes at a seasonal scale revealed that stochastic processes were the main drivers (80%) of the Group II community assembly, though deterministic processes were noticeable (20%) in June and July. This latter observation may reflect the specific Syndiniales-dinoflagellate interactions in summer.

INTERANNUAL POPULATION DYNAMICS OF THE CTENOPHORE <i>BEROE OVATA</i> BRUGUIÈRE, 1789 AT THE OUTER SHELF OF SEVASTOPOL BAY OF THE BLACK SEA

Based on the results of cruises and long-term monitoring at the outer shelf of Sevastopol Bay, the interannual dynamics of the state of the population of the alien ctenophore Beroe ovata in the Black Sea for 2000-2021 was analyzed. It was established that in recent years the ctenophore was found in plankton earlier than usual, the period of its active pelagic life increased to 7-8 months, and the body length in juveniles decreased from 40 to 20-25 mm. Three seasonal periods are distinguished, which, due to their temperature conditions, were especially significant for the species: January - February, April - May and July - August. The high temperature of sea water in July - August usually contributes to an increase in abundance and biomass of the ctenophore, as well as a decrease in the average size. The period of active life of B. ovata depends on the warming of the sea in May, as well as on the biomass of Pleurobrachia pileus . B. ovata early appearance leads to faster supression of Mnemiopsis leidyi , preventing it from reaching a high abundance and biomass in summer.

Abundance of fin whales in West Greenland in 2007

An aerial line transect survey of fin whales (Balaenoptera physalus) conducted off West Greenland in 2007 was used to estimate the current abundance of fin whales on the summer feeding ground. A total of 24 sightings of fin whale groups were collected during 8,632km of survey effort in sea states <5. Based on conventional distance sampling techniques an abundance of 4,359 whales (95% CI 1,879–10,114) was estimated. The survey was conducted as a double platform survey and mark recapture distance sampling techniques were used to correct for perception bias which resulted in an estimate of 4,468 whales (95% CI 1,343–14,871). Both estimates are negatively biased because no corrections were applied for whales that were submerged during the passage of the survey plane. The abundance estimate furthermore only represents the coastal areas of West Greenland. The sightings at the westernmost border of the strata suggest that the entire Baffin Bay-Davis Strait summer abundance of fin whales could be considerably larger. Based on comparison with previous surveys in West Greenland in 1987/88 and 2005 it appears that the fin whale abundance in West Greenland has increased.

Mark-recapture estimates of seasonal abundance and survivorship for bottlenose dolphins (Tursiops truncatus) near Charleston, South Carolina, USA

The stock structure of western North Atlantic bottlenose dolphins (Tursiops truncatus) is complex, with seasonally migratory stocks often overlapping with year-round resident stocks. High rates of exchange between northernmost sites have been documented but movement and seasonal fluctuation in abundance among sites along the southern portion of the US Atlantic coast is not well understood. To better understand seasonal abundance, a three-year mark-recapture study of bottlenose dolphins in coastal and estuarine waters near Charleston, South Carolina, USA was conducted. A robust design was employed in order to minimise bias and more precisely determine seasonal estimates of abundance and concurrently examine temporary immigration/emigration and survivorship. Systematic boat-based surveys were carried out (n = 192) from January 2004 to December 2006. The entire study area was surveyed one week per month; an additional survey was conducted in the months in which seasonal abundance was estimated: January (winter), April (spring), July (summer) and October (autumn). Standard photo-identification techniques were used to accumulate sightings of 521 distinctively marked dolphins, 65% of which were sighted more than once. Pollock’s robust design was applied using MARK and the ensuing abundance estimates were adjusted for the seasonal proportion of unmarked dolphins (ranging from 0.27 to 0.40) in the population. Estimates ranged from 364 (95% CI = 305–442) in January 2004 to 910 (95% CI = 819–1018) in October 2006. Summer abundance estimates were consistently greater than those from winter months, although estimates varied considerably among years. The same model was used to calculate an annual survival rate estimate of 0.951 (95% CI = 0.882–1.00) for marked individuals within the population. A high degree of transience, demonstrated by seasonal influxes of single-sighted individuals, made it difficult to differentiate between mortality and permanent emigration. The results support the occurrence of three distinct dolphin groups found in Charleston waters: year-round residents; seasonal residents; and transients. Reporting abundance and survivorship estimates together is useful in explaining and validating results for populations in which transient individuals occur. These results provide important information for stock and viability assessment of coastal bottlenose dolphins in the western North Atlantic.

The rapid shift of intertidal macroalgal assemblage from vertical shoreline profiles in Barton Peninsula, King George Island, Antarctica during summer

Temporal variability and the vertical shoreline profile of an intertidal macroalgal assemblage were examined on the coast of Barton Peninsula, Maxwell Bay, King George Island, Antarctica. Sampling was performed during the three austral summer seasons from November 2016 to January 2019. The sampling interval for the summer shift was 1–2 months. Eighteen algal species were identified, with 75% relative coverage of the predominant red alga Iridaea cordata and endemic brown alga Phaeurus antarcticus. Temporal variation in the macroalgal assemblage showed 78.35% similarity between one month and 64.61% similarity between two months. Contour plots for visualizing macroalgal distribution were first attempted in this study, and compared to general distribution of tables and diagrams that were discontinuously expressed. The coastscape was expressed more quantitatively and continuously, and was also useful for explaining temporal changes such as summer abundance can be described as a shift from I. cordata to P. antarcticus. In addition, in terms of species composition, this study area corresponds to the middle to lower intertidal zone and shows the highest species diversity in King George Island, so it is expected to provide important information for the researches in Antarctic intertidal zones.

Long-term insect censuses capture progressive loss of ecosystem functioning in East Asia.

Insects provide critical ecosystem services such as biological pest control, in which natural enemies (NE) regulate the populations of crop-feeding herbivores (H). While H-NE dynamics are routinely studied at small spatiotemporal scales, multiyear assessments over entire agrolandscapes are rare. Here, we draw on 18-year radar and searchlight trapping datasets (2003-2020) from eastern Asia to (i) assess temporal population trends of 98 airborne insect species and (ii) characterize the associated H-NE interplay. Although NE consistently constrain interseasonal H population growth, their summer abundance declined by 19.3% over time and prominent agricultural pests abandoned their equilibrium state. Within food webs composed of 124 bitrophic couplets, NE abundance annually fell by 0.7% and network connectance dropped markedly. Our research unveils how a progressive decline in insect numbers debilitates H trophic regulation and ecosystem stability at a macroscale, carrying implications for food security and (agro)ecological resilience during times of global environmental change.

Abundance and associated factors of Amblyomma tigrinum (Acari: Ixodidae) infesting wild foxes in north-central Chile.

The tick Amblyomma tigrinum inhabits areas with diverse climatic conditions, with adult stages parasitizing wild canids, such as chilla (Lycalopex griseus) and culpeo (Lycalopex culpaeus) foxes. We described the infestation loads in wild foxes captured at three sites (periurban, rural and wild) through an anthropization gradient in north-central Chile. We tested whether local-scale environmental and/or individual host factors can predict tick abundance by using negative binomial models. During 2018-2020 (spring and summer), we captured 116 foxes (44 chillas and 72 culpeos), and 102 of them were infested with ticks (87.9%, CI=80.6-93.2%). We collected 996 A. tigrinum adult ticks, estimating a total mean abundance of 8.6±0.8 ticks/host. Periurban and rural foxes harbored greater tick loads than foxes from the wild site (2.34 and 1.71 greater, respectively) while tick abundance in summer decreased by up to 57% compared to spring. Tempered, more humid climate conditions of the periurban site could favor the development and survival of adults A. tigrinum; and ticks may have adopted a quiescent stage or similar survival mechanisms to cope with summer temperature increases related to the ongoing megadrought. Further studies are warranted to understand the underlying factors determining the life cycle of A. tigrinum at larger spatiotemporal scales.

Terrestrial arthropods diversity in the Argan Biosphere Reserve: Seasonal dynamics and ecological function roles

Diversity, spatial patterns and temporal trends of terrestrial arthropod communities in the Arganeraie Biosphere Reserve of Morocco are poorly understood. Arthropods were seasonally sampled using pitfall traps at four sites, three of which are Argan forest ecosystem and one of which is a modern Argan grove. Diversity parameters were seasonally measured. Observation allowed identification of 161 morphospecies belonging to the five classes Chilopoda, Malacostraca, Collembola, Insecta and Arachnida were recorded. Captures were dominated by insects, representing more than 90% of the total trapped individuals. Insecta were the most diversified class (122 morphospecies), followed by Arachnida (33). The three other classes were less diversified with two species each. Among insects, Coleoptera and Hymenoptera were the most diversified groups. Diversity parameters exhibited seasonal variations. The highest arthropod abundance per sample was recorded during spring, while observed richness was higher in spring and summer. Shannon diversity index showed no significant difference among seasons. The composition of terrestrial arthropod communities between sites changed among seasons. A high dissimilarity was reported between the terrestrial arthropod community of Belfaa and those of other sites. The classification of arthropods into trophic guilds shows the importance of both predators and detritivores, which shows a higher abundance in spring and summer. Overall, predators guild richness was higher than others among seasons. This study highlights spatiotemporal diversity composition and structure of terrestrial arthropods community associated with the Argan ecosystem, complementing the unique diversity and proliferation of ecotypes present in Morocco.

Effects of rainfall in the arid zone on waterbird abundance at a wastewater treatment plant in coastal South Australia

We investigated which species of waterbirds at Bolivar, a wastewater treatment plant in Metropolitan Adelaide, South Australia, are likely to have been immigrants from the ephemeral wetlands in the arid zone. To do this, we compared the abundance of waterbird species observed at Bolivar during the dry period in the eastern arid zone of late 2018 and 2019 with that during the subsequent wet period 2020–2022. Pink-eared Duck Malacorhynchus membranaceus, Grey Teal Anas gracilis, Australasian Shoveler Spatula rhynchotis, Hardhead Aythya australis and Blue-billed Duck Oxyura australis were all more abundant during the arid-zone dry period. By contrast, Australian Shelduck Tadorna tadornoides, Eurasian Coot Fulica atra and Black Swan Cygnus atratus showed increased abundance in spring and early summer in all years, with no marked differences between the dry and wet periods in the arid zone. Wader species that breed in the Northern Hemisphere – Sharp-tailed Sandpiper Calidris acuminata and Red-necked Stint C. ruficollis – also tended to be more abundant during the arid-zone dry year, as did Red-necked Avocet Recurvirostra novaehollandiae, whereas Pied Stilt Himantopus leucocephalus tended to be more abundant in the arid-zone wet years, with breeding by this species taking place in spring. These data suggest that Bolivar is a critically important conservation site for waterbirds and that various species use this location as a refuge during dry times in the arid zone of eastern Australia.

The role of diatoms algae in phytoplankton of dystrophic lakes

The paper presents seasonal indicators of the abundance and biomass of the dominant groups of algae in the phytoplankton of lakes Kurganistoye and Yazhginya. In both lakes the largest values of summer abundance and biomass are formed by cryptophyte algae. A group of diatoms formed the peaks of only the May values of the abundance and biomass of phytoplankton in Lake Yazhginya.

Camera trapping as a method for estimating abundance of Mexican wolves

AbstractEstimating wildlife abundance, particularly for rare and elusive species, is challenging because of time, cost, and methodological constraints. The Mexican wolf (Canis lupus baileyi), a federally‐listed endangered subspecies of gray wolf, is currently monitored using ground and aerial methods to obtain a minimum known population count. As the Mexican wolf population has grown and expanded, the time and cost required to monitor the subspecies has increased. We investigated the efficacy of camera trapping for estimating Mexican wolf abundance by comparing the accuracy, precision, and cost of camera trapping to those obtained with current monitoring techniques. Between 1 November 2019 and 31 July 2020, we collected 13,317 photos of wolves from 124 camera traps in Arizona where Mexican wolves were known to occur, excluding tribal lands. We used a spatial mark‐resight analysis to estimate abundance for both winter (November 2019 through February 2020) and summer (April through July 2020) seasons, with and without the assistance of global positioning system (GPS) telemetry data to identify individual wolves. Combined with GPS data, camera trapping provided a summer abundance estimate ( = 50, 95% CI = 37–64) that was 14% lower than the 2019 minimum known population count (N = 59), but included the minimum known population count in the 95% confidence interval. The summer no telemetry abundance estimate was 27% below the minimum known population count ( = 43, 95% CI = 30–56). During winter, abundance estimates obtained from camera trapping (no telemetry: = 33, 95% CI = 15–52; telemetry: = 45, 95% CI = 28–62), were much lower than the 2019 Mexican wolf minimum known population count (winter: N = 62), but included the minimum known population count in the 95% confidence interval for the winter telemetry dataset. A cost comparison indicated that the first‐year camera trapping equipment expenses were 1.7 times the equipment cost of the current method and that camera trapping equipment expenses in subsequent years were equivalent to the equipment cost of the current method, and required at least 1.4 times the labor hours. We provide recommendations to potentially improve Mexican wolf abundance estimates and minimize camera trapping expenses. The results of our project may help managers make appropriate decisions for their population monitoring needs, while considering budget, staffing capabilities, precision, and accuracy.

Occurrence, characteristics, and removal of microplastics in wastewater treatment plants located on the Moroccan Atlantic: The case of Agadir metropolis

Wastewater treatment plants (WWTPs) are some of the main sources of microplastics (MPs) in the environment. However, studies on the occurrence and removal efficiency of MPs in WWTPs are still scarce, especially in African countries. Thus, the aim of this work was to study the abundance of MPs in the influent and effluent of two WWTPs (Aourir and M'zar) from the Agadir metropolis (Moroccan Atlantic). The two WWTPs receive different wastewater inputs (domestic and industrial). In addition, the impacts of seasonality on the fate and removal efficiency were investigated. The results showed that the MPs abundance in the wastewater decreased from 188 MPs/L in the influent to 50 MPs/L in the effluent for Aourir WWTP (domestic inputs); while the abundance was greater in the M'zar WWTP (urban and industrial inputs) recording a mean value of 519 MPs/L and 86 MPs/L in the influent and effluent, respectively. MPs collected in the Aourir WWTP ranged from 290 to 3200 μm, while MPs from the M'zar WWTP, ranged from 330 to 4200 μm. Overall, the size range of 100–500 μm was the most abundant for both WWTPs. Fibers were the highest MPs morphotype found, followed by fragments. MP colors were mainly red, black, blue, and transparent for both treatment plants. Additionally, FTIR spectroscopy showed the presence of eight different polymers, mainly polyethylene (PE), polypropylene (PP), and polystyrene (PS). Seasonal variation analysis showed that MPs abundance in summer was significantly higher compared to other seasons. However, the comparison of the removal efficiency (RE) between the different seasons indicated that the winter season (74 %) recorded the highest RE for Aourir WWTP. Conversely, spring (87 %) recorded the highest RE for M'zar WWTP. SEM/EDX micrographs showed different degrees of weathering and chemical elements adhering to the surface of the MPs. The findings of the current study will serve as a baseline for future considerations about management strategies, wastewater reuse, as well as the understanding of the occurrence of microplastic pollution along the marine ecosystems of Morocco.

Shifting climate conditions affect recruitment in Midwestern stream trout, but depend on seasonal and spatial context

AbstractClimate change is a complex threat to freshwater ecosystems. Effects on aquatic species will likely differ among populations depending on seasonal and spatial context, which makes a detailed understanding of population responses to shifting climate conditions key to guiding strategic decision‐making. However, few empirical studies have tested for such context dependency on distinct populations across seasons or at large spatial scales. We used 26 years of standardized survey data on recreationally and economically important brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta) in Wisconsin, USA to assess short‐ and long‐term variability in population trends, and quantify the influence of seasonal and spatial climate variability (air temperatures and precipitation) on annual recruitment strength (as indexed by young‐of‐year [YOY] relative abundance in summer). Some short‐term population fluctuations were spatially consistent across the state, indicative of broadscale environmental forcing. Over the longer term, average YOY and age 1 and older brook trout relative abundance has declined since 2006, especially for YOY, while brown trout abundance has substantially increased. The effects of climate conditions on recruitment varied by species, season, and latitude. Increasing maximum summer temperatures were associated with lower brook trout recruitment, but higher brown trout recruitment. The effect for both species was stronger at lower latitudes. Spring temperatures were positively related to brown trout recruitment at lower latitudes; in mid‐latitude and northern streams, they were related to increasing recruitment up to about 1 standard deviation, above which recruitment declined. High and low winter and spring precipitation were associated with precipitous declines in recruitment for both species. By contrast, summer precipitation was positively related to recruitment in northern streams for brook trout and southern streams for brown trout. Our results demonstrate that shifts in climate can affect recruitment in similar species differently depending on temporal (seasonal) and spatial (warm, southern regions compared with cool, northern regions) context. Given trout population trends in Wisconsin and climate projections for the Midwestern United States, location‐ and species‐specific management actions are needed that account for this context dependency. Management should aim to maximize the resiliency of populations to extreme climate conditions by buffering negative influences on recruitment.

Metagenomic Analysis of Respiratory RNA Virome of Children with and without Severe Acute Respiratory Infection from the Free State, South Africa during COVID-19 Pandemic Reveals Higher Diversity and Abundance in Summer Compared with Winter Period.

Viral respiratory infections contribute to significant morbidity and mortality in children. Currently, there are limited reports on the composition and abundance of the normal commensal respiratory virome in comparison to those in severe acute respiratory infections (SARIs) state. This study characterised the respiratory RNA virome in children ≤ 5 years with (n = 149) and without (n = 139) SARI during the summer and winter of 2020/2021 seasons in South Africa. Nasopharyngeal swabs were, collected, pooled, enriched for viral RNA detection, sequenced using Illumina MiSeq, and analysed using the Genome Detective bioinformatic tool. Overall, Picornaviridae, Paramoxyviridae, Pneumoviridae, Picobirnaviridae, Totiviridae, and Retroviridae families were the most abundant viral population in both groups across both seasons. Human rhinovirus and endogenous retrovirus K113 were detected in most pools, with exclusive detection of Pneumoviridae in SARI pools. Generally, higher viral diversity/abundance was seen in children with SARI and in the summer pools. Several plant/animal viruses, eukaryotic viruses with unclear pathogenicity including a distinct rhinovirus A type, were detected. This study provides remarkable data on the respiratory RNA virome in children with and without SARI with a degree of heterogeneity of known viruses colonizing their respiratory tract. The implication of the detected viruses in the dynamics/progression of SARI requires further investigations.

Phytoplankton Community Structure Dynamics in Relation to Water Environmental Factors in Zhalong Wetland.

Phytoplankton, as the primary producer of the wetland water ecosystem's food chain, are very sensitive to environmental changes. In order to explore the significance of phytoplankton in protecting ecosystem integrity, the wetland ecosystem in Zhalong wetland, one of the most important international wetlands, was selected as the research area. For the study, 81 sampling sites were set up in the whole wetland, and phytoplankton samples and water quality environmental factors were measured in spring, summer, and autumn of 2019. The phytoplankton community structure and water environmental factors were evaluated by canonical correspondence analysis (CCA). The main research findings are as follows: a total of 292 species and variants of phytoplankton belonging to 8 phyla and 110 genera were identified within Zhalong wetland in spring, summer, and autumn 2019. The total phytoplankton abundance and biomass in summer were higher than in spring and autumn, and Cyclotella meneghiniana was the most dominant species in three seasons and three areas. The results of random forest are generally consistent with the results of CCA in spring, when the main environmental factors affecting phytoplankton were NTU and WT; the result in summer and autumn agreed with those of CCA, which awaits further study. In addition, the phytoplankton is mainly affected by WT, depth, and DO in the lake area, TP, DO, and NTU in the river area, and WT in the wetland area.

Biogeography of algae and invertebrates from wave-exposed rocky intertidal habitats along the Atlantic coast of Nova Scotia (Canada): Latitudinal and interannual patterns and possible underlying drivers

Biogeographic studies aim to understand species distributions and are becoming increasingly relevant to establish baselines to monitor ecological change. The NW Atlantic coast hosts a cold-temperate biota, although knowledge about its biogeography is patchy. This study documents for the first time biogeographic variation at mid-to-high intertidal elevations in wave-exposed rocky intertidal habitats along the open Atlantic coast of Nova Scotia (Canada), a hydrographically distinct subregion of this cold-temperate region. For this goal, we measured the summer abundance of algae and invertebrates at the same nine locations over four consecutive years (2014 to 2017) spanning 415 km of coastline, which allowed us to examine latitudinal and interannual patterns. In addition, we looked for mensurative evidence on possible drivers underlying these patterns, focusing on sea surface temperature, daily maximum and minimum temperature (which often happen at low tides at thus differ from sea surface temperature), pelagic food supply for intertidal filter-feeders (phytoplankton abundance and particulate organic carbon), drift sea ice during the cold season (which can cause intertidal disturbance), and species associations. Our field surveys revealed that northern locations can be severely disturbed by ice scour when drift ice is abundant and, while biological recolonization occurs over the years, it differs in pace among locations. Southern locations, instead, did not experience ice scour during our study and, thus, generally exhibited a higher species richness and abundance than northern locations. Multivariate analyses indicated that the aforementioned expressions of temperature and pelagic food supply explained together 32–55% of the variation in alongshore biogeographic pattern, depending on the year. Species association analyses suggest that algal foundation species (generally more abundant at southern locations) contribute to increase location-wise species richness. Mensurative evidence for bottom-up forcing in seaweed–herbivore and filter-feeder–predator systems differed greatly among years. Overall, in addition to its inherent value to advance NW Atlantic intertidal biogeography, our species distribution database should be valuable to assess ecological change decades into the future as climate change and other anthropogenic influences unfold.