Abundance In Response Research Articles

Interfering with neighbouring communities: Allelopathy astray in the tundra delays seedling development

Abstract Altered species composition caused by environmental and climatic change can affect the transfer of plant residues among communities. Whereas transferred residues are typically considered a resource in recipient systems, residues of allelopathic species may instead cause interference. Evergreen dwarf shrubs, specifically the allelopathic species Empetrum nigrum are increasing in abundance in response to a warming climate. Empetrum has small, evergreen leaves that can be transferred to other communities when withered and lost from the plant. We hypothesize that Empetrum can have allelopathic effects in the recipient communities of the withered leaves. We call this allochthonous allelopathy as opposed to autochthonous allelopathy, which is well documented in communities where the plant grows. We measured influx of allochthonous Empetrum leaves onto snow‐covered snowbeds, where they are easily identified within the debris. Next, we compared the bioactivity of allochthonous withered leaves with that of green Empetrum leaves. Finally, we conducted an experiment testing the germination and seedling growth of 10 tundra species in snowbed soil supplemented with no (control) and three densities of allochthonous Empetrum leaves. We found Empetrum leaves to be common on the snow cover of snowbeds. We found Empetrum leaves collected on snowbeds to be as bioactive as green leaves. Finally, we found forb species to have reduced germination and all 10 species to have delayed seedling development when growing in snowbed soil supplemented with withered Empetrum leaves. Seedlings under the control treatment were 2.3 times longer and had 3.2 times more leaves in comparison to seedlings grown under the strongest allochthonous leaf treatment. Results from our study imply that Empetrum is allelopathic in recipient systems of its allochthonous leaves. The abundant nature of Empetrum in the tundra suggests that allochthonous allelopathy is a common phenomenon, causing biotic stress in snowbeds and potentially other parts of the tundra. Exemplifying the ability of a plant to interfere in neighbouring communities, our study demonstrates a plant trait that may provide insight to other study systems. A free Plain Language Summary can be found within the Supporting Information of this article.

Gas chromatography-mass spectrometry (GC/MS) reveals urine metabolites associated to light and heavy infections by Schistosoma mansoni in mice.

High-throughput profiling of metabolites has been used to identify metabolic changes in murine models as a response to the infection by the parasitic trematode Schistosoma. These investigations have contributed to our understanding on the pathogenesis of this tropical neglected disease, with a potential of helping diagnosis. Here, our study aimed to investigate the application of gas chromatography-mass spectrometry (GC/MS) on the profiling of urine metabolites from mice carrying infections by Schistosoma mansoni. Two larval infection doses created distinctive infection intensities in mice, whereby the heavily infected animals were found to release 25 times more eggs in faeces than lightly infected animals. Over 200 urine metabolites were identified from these animals by GC/MS, following two complementary derivatisation methods. A list of 14 individual metabolites with altered relative abundances between groups were identified. Most of the altered metabolites showed a trend of increased abundances in response to infection intensity, indicating host-specific metabolic alterations as a result of the disease. Hippurate, a metabolite which concentration is intimately modulated by the gut microbiota, was found to be highly correlated to infection intensity. Our study showed that urine metabolic profiling by GC/MS can distinguish non-infected animals from those carrying light and heavy infections by S. mansoni, revealing metabolites associated to the infection and providing insights on the pathogenesis of schistosomiasis.

Patterns of invasive plant abundance in disturbed versus undisturbed forests within three land types over 16 years

AbstractAimLong‐term monitoring of forest understorey species was used to describe changes in native and invasive exotic plant abundances over time within different disturbed or undisturbed forest types. This information was then used to determine the predictive invasion model (passenger/opportunist, driver or back‐seat driver).LocationCheat Ranger District of the Monongahela National Forest, West Virginia, USA.MethodsUnderstorey vegetation of mature and clear‐cut forests was sampled every 5–6 years for 16 years. Stands were stratified across three land types following a moisture gradient. Invasive plant richness, frequency and abundance were evaluated across land type and disturbance type with general linear mixed models. Change in richness, diversity and abundance of both native and invasive non‐native plants was evaluated as a measure of impact.ResultsThe mesic mature stands had the greatest invasive plant richness, frequency and abundance. The moderately mesic clear‐cut stands initially showed the greatest invasive plant richness, frequency and abundance, but over time these values became greater for the drier clear‐cuts. The mature forests showed no change in native species abundance in response to invasion. Clear‐cut‐drier stands showed a decrease, while the more mesic stands showed an increase in native plant richness, diversity and abundance in response to invasion. The drier clear‐cuts, with increasing invasions and negative native species impacts, were indicative of the back‐seat driver model. The hitchhiker model, a new term, described increasing plant invasions with no measurable impacts.Main ConclusionsThe drier clear‐cut stands exhibit a lack of biotic resistance to invasion, unlike the mesic clear‐cut stands. Increasing invasion in the mature forests suggests that a threshold may be reached that results in impacts on the native vegetation, but with no increase in native plant abundance to help alleviate these effects.

Mimulus sRNAs Are Wound Responsive and Associated with Transgenerationally Plastic Genes but Rarely Both.

Organisms alter development in response to environmental cues. Recent studies demonstrate that they can transmit this plasticity to progeny. While the phenotypic and transcriptomic evidence for this “transgenerational plasticity” has accumulated, genetic and developmental mechanisms remain unclear. Plant defenses, gene expression and DNA methylation are modified as an outcome of parental wounding in Mimulus guttatus. Here, we sequenced M. guttatus small RNAs (sRNA) to test their possible role in mediating transgenerational plasticity. We sequenced sRNA populations of leaf-wounded and control plants at 1 h and 72 h after damage and from progeny of wounded and control parents. This allowed us to test three components of an a priori model of sRNA mediated transgenerational plasticity—(1) A subset of sRNAs will be differentially expressed in response to wounding, (2) these will be associated with previously identified differentially expressed genes and differentially methylated regions and (3) changes in sRNA abundance in wounded plants will be predictive of sRNA abundance, DNA methylation, and/or gene expression shifts in the following generation. Supporting (1) and (2), we found significantly different sRNA abundances in wounded leaves; the majority were associated with tRNA fragments (tRFs) rather than small-interfering RNAs (siRNA). However, siRNAs responding to leaf wounding point to Jasmonic Acid mediated responses in this system. We found that different sRNA classes were associated with regions of the genome previously found to be differentially expressed or methylated in progeny of wounded plants. Evidence for (3) was mixed. We found that non-dicer sRNAs with increased abundance in response to wounding tended to be nearby genes with decreased expression in the next generation. Counter to expectations, we did not find that siRNA responses to wounding were associated with gene expression or methylation changes in the next generation and within plant and transgenerational sRNA plasticity were negatively correlated.

Quantitative proteomics reveals dual effects of calcium on radicle protrusion in soybean

To reveal calcium-mediated germination in soybean, a gel-free/label-free proteomics was performed in radicle of seed imbibed with CaCl2. Morphological analysis presented promoting and suppressing performance of seed growth under 5 and 50 mM CaCl2, respectively. A total of 106 and 581 proteins were identified in response to 5 and 50 mM CaCl2, respectively. Among 33 proteins, which were simultaneously affected by 5 and 50 mM CaCl2 imbibition, proteins related to protein metabolism, cell, development, and stress showed reversed abundance in response to CaCl2 on dose-dependent manner. Notably, protein abundance of late embryogenesis abundant (LEA) 4–5, LEA4, and dehydrin decreased and increased by 5 and 50 mM CaCl2, respectively, consistent with the transcript level. Moreover, inhibited biosynthesis of gibberellic acid repressed growth of 5 mM CaCl2-imbibed soybean, while inhibition of abscisic acid biosynthesis released the suppressing effects of 50 mM CaCl2. Taken together, these results suggest that decreased or increased protein abundance of LEA4–5, LEA4, and dehydrin might determine promoting or suppressing effects of low or high level of calcium on soybean through enhancing seed sensitivity to gibberellic acid or abscisic acid during radicle protrusion. SignificanceCalcium serves as a versatile signal in plant growth; however, calcium-mediated germination on dose-dependent manner remains elusive. In this study, dual effects of calcium on radicle protrusion in soybean were investigated using proteomic approach. Radicle growth of germinating seed was improved by 5 mM CaCl2; however, it was retarded by 50 mM CaCl2. Late embryogenesis abundant (LEA) 4–5, LEA4, and dehydrin displayed converse profiles in response to low and high concentrations of CaCl2 at both protein abundance and gene expression level. Inhibited biosynthesis of gibberellic acid (GA) significantly impeded radicle protrusion in presence of low concentration of CaCl2, while inhibiting of abscisic acid (ABA) biosynthesis released suppression induced by high concentration of CaCl2. These findings suggest that LEA proteins are associated with calcium-mediated radicle protrusion on dose-dependent manner, and seed sensitivity to GA and ABA might determine promoting and suppressing effects of calcium on radicle protrusion in soybean.

Dynamics of soil N2O emissions and functional gene abundance in response to biochar application in the presence of earthworms.

Nitrous oxide (N2O) is a devastating greenhouse gas and acts as an ozone-depleting agent. Earthworms are a potential source of soil N2O emissions. Application of biochar can mitigate earthworm-induced N2O emissions. However, the underlying interactive mechanism between earthworms and biochar in soil N2O emissions is still unclear. A 35-day laboratory experiment was conducted to examine the soil N2O emission dynamics for four different treatments, earthworm presence with biochar application (EC), earthworm presence without biochar application (E), earthworm absence with biochar application (C) and earthworm absence without biochar application, and the control. Results indicated a negative impact of biochar on earthworm activity, displaying a significantly (p≤0.05) lower survival rate and biomass of earthworms in treatment EC than E. Compared with the control, earthworm presence significantly (p≤0.05) increased cumulative N2O emissions, while application of biochar in the presence of earthworms significantly (p≤0.05) decreased cumulative N2O emissions (485 and 690μgkg-1 for treatments EC and E, respectively). Treatments E and EC significantly (p≤0.05) increased soil microbial biomass carbon (MBC), ammonium (NH4+-N), nitrate (NO3-N), and dissolved organic carbon (DOC) content and soil pH as compared with the control. The gene copy number of 16S rRNA, AOA, AOB, nirS, and nosZ increased for all treatments when compared with the control; however, a significant (p≤0.05) difference among the studied genes was only observed for the nosZ gene (2.05 and 2.56×106 gene copies g-1 soil for treatments E and EC, respectively). Earthworm-induced soil N2O emissions were significantly (p≤0.05) reduced by biochar addition. The possible underlying mechanisms may include: (1) short-term negative impacts on earthworm activity; (2) a change of functional gene abundance in earthworm casts; and (3) an increase in soil pH due to addition of biochar.

Perennial rhizomatous grasses: Can they really increase species richness and abundance in arable land?—A meta‐analysis

AbstractPerennial rhizomatous grasses (PRG), such as miscanthus and switchgrass, are considered promising lignocellulosic feedstocks. Their cultivation is expected to experience a significant increase in the near future, as it offers a wide range of benefits. For instance, when PRG replace typical annual crops, positive biodiversity impacts are usually anticipated. However, to date, there is no solid, statistically strong evidence for this hypothesis. This study aims to evaluate its validity through a meta‐analysis based on an extensive systematic literature review of research comparing biodiversity attributes in PRG and common annual crops. Dynamics of species richness and abundance in response to PRG cultivation were quantitatively evaluated drawing on 220 paired comparisons from 25 studies. This includes data on five taxonomic groups—arthropods, birds, earthworms, mammals and plants—and three PRG—miscanthus, switchgrass and reed canary grass. The results indicate that biodiversity tends to be higher in PRG cultivations relative to the reference crops, but the initial hypothesis of significantly beneficial impacts could not be confirmed. Trends were specific to the individual taxonomic groups: significantly higher biodiversity was found for plants and small mammals. Positive but insignificant trends were observed for arthropods and birds, while earthworm response was neutral and insignificant. More substantial conclusions could not be drawn, which is mainly due to the low number of studies conducting biodiversity assessments in PRG cultivations that included a comparison with annual crops. In addition, a detailed analysis of the observed responses was impaired by poor reporting of the parameters influencing biodiversity in the studies reviewed, such as planting and crop density, as well as yields. For this reason, we conclude with a call for improved data reporting in biodiversity assessments of PRG cultivations and detail requirements for future biodiversity research.

Nitrapyrin reduced ammonia oxidation with different impacts on the abundance of bacterial and archaeal ammonia oxidisers in four agricultural soils

The compound nitrapyrin can act as a potential nitrification inhibitor (NI) when applied with ammonium (NH4+)-based N fertiliser. The efficacy of nitrapyrin applications may be soil dependent however, being influenced by soil texture, organic carbon (C), and moisture. The objective of this study was to assess the effects of nitrapyrin on the nitrification process in soils of different physicochemical characteristics and resident microbial communities. Four agricultural soils were incubated in microcosms for five weeks, after which nitrapyrin effects were assessed for soil NH4+, nitrate (NO3−), the microbial functional genes ammonia-monooxygenase (amoA) and nitrite oxidoreductase (nxr), and bacterial and archaeal nitrifier genera using 16S rRNA sequencing. Nitrapyrin co-applied with urea ammonium nitrate (UAN) fertiliser inhibited nitrification, shown by increased retention of NH4+ in all four soils and a lower accumulation of NO3− in three of the four soils compared to UAN treated soil. These results are most likely due to the inhibition of growth of ammonia oxidising bacteria (AOB) as nitrapyrin plus UAN reduced bacterial amoA abundance in three of the four soils compared to the UAN treatment. This study is the first to report increased archaeal amoA abundance in response to the co-application of nitrapyrin and UAN in four soils, possibly due to reduced competition from AOB. The bacterial nitrifier genera Nitrosospira and Nitrospira and archaeal nitrifier genus Nitrososphaera were detected in all four soils using 16S rRNA sequencing. The effects of nitrapyrin on downstream N transformations were assessed based on nxr and Nitrospira abundance though no conclusive treatment effects could be discerned for the four soils. Our results provide evidence of the interplay of AOB, ammonia oxidising archaea (AOA) and nitrite-oxidising bacteria (NOB) in nitrapyrin and fertiliser treated soils and will be useful in developing strategies to improve the efficacy of nitrification inhibitors in future studies.

Experimental investigation of tidal and freshwater influence on Symbiodiniaceae abundance in Anthopleura elegantissima.

The San Francisco Bay outflow creates a tidally influenced low-salinity plume that affects adjacent coastal sites. In the study region, Anthopleura elegantissima (Cnidaria; Anthozoa) hosts a single symbiont, the dinoflagellate Breviolum muscatinei. Salinity, temperature, and aerial stress induce a bleaching response similar to corals where symbionts are expelled, causing further energetic stress. Using field observations of environmental conditions and symbiont abundance at sites on a gradient of exposure to estuarine outflow, along with a fully crossed multifactorial lab experiment, we tested for changes in symbiont abundance in response to various combinations of three stressors. Lab experiments were designed to mimic short term outflow events with low salinity, high temperature, and aerial exposure treatments. The lab aerial exposure treatment was a statistically significant factor in suppressing symbiont repopulation (ANOVA, p = .017). In the field, symbiont density decreased with increasing tidal height at the site closest to freshwater outflow (ANOVA, p = .007), suggesting that aerial exposure may affect symbiont density more than sea surface temperature and salinity. Unanticipated documentation of survival in 9 months of sand burial and subsequent repopulation of symbionts is reported as a six-month extension to past observations, exemplifying strong tolerance to environmental insult in this Cnidarian mutualism. The study of this symbiosis is useful in examining predicted changes in ocean conditions in tidepool communities and considering relative sources of stress.

Vegetation management on private forestland can increase avian species richness and abundance

AbstractConservation efforts on private lands are important for biodiversity conservation. On private lands in South Carolina, in the southeastern United States, forestry management practices (prescribed burning, thinning, herbicide application) are used to improve upland pine habitat for wildlife and timber harvest and are incentivized through U.S. Department of Agriculture Farm Bill cost-share programs. Because many forest-dependent avian species have habitat requirements created primarily through forest management, data are needed on the effectiveness of these management activities. We studied privately owned loblolly pine (Pinus taeda) stands in the South Carolina Piedmont region. Our objective was to understand how management practices influence avian species richness and abundance at local (forest stand) and landscape levels in relatively small stands (average ~28 ha). We surveyed 49 forest stands during 2 bird breeding seasons with traditional point counts and vegetation surveys. We evaluated the effects of management on pine stand characteristics, avian species richness, and abundance of state-designated bird species of concern. Repeated burning and thinning shifted stand conditions to open pine woodlands with reduced basal area and herbaceous understories. Stands with lower basal area supported greater avian species richness. Some species increased in abundance in response to active management (e.g., Brown-headed Nuthatch [Sitta pusilla] and Indigo Bunting [Passerina cyanea]), but relationships varied. Some species responded positively to increases in forest quantity at a landscape scale (1–5 km; e.g., Northern Bobwhite [Colinus virginianus]). We found species-rich avian communities and species of conservation concern on working timber lands, indicating that incentivized forest management on private lands can provide valuable habitat for wildlife.

Seasonal and individual event-responsiveness are key determinants of carbon exchange across plant functional types.

Differentiation in physiological activity is a critical component of resource partitioning in resource-limited environments. For example, it is crucial to understand how plant physiological performance varies through time for different functional groups to forecast how terrestrial ecosystems will respond to change. Here, we tracked the seasonal progress of 13 plant species representing C3 shrub, perennial C3 and C4 grass, and annual forb functional groups of the Colorado Plateau, USA. We tested for differences in carbon assimilation strategies and how photosynthetic rates related to recent, seasonal, and annual precipitation and temperature variables. Despite seasonal shifts in species presence and activity, we found small differences in seasonally weighted annual photosynthetic rates among groups. However, differences in the timing of maximum assimilation (Anet) were strongly functional group-dependent. C3 shrubs employed a relatively consistent, low carbon capture strategy and maintained activity year-round but switched to a rapid growth strategy in response to recent climate conditions. In contrast, grasses maintained higher carbon capture during spring months when allperennials had maximum photosynthetic rates, but grasses were dormant during months when shrubs remained active. Perennial grass Anet rates were explained in part by precipitation accumulated during the preceding year and average maximum temperatures during the past 48h, a result opposite to shrubs. These results lend insight into diverse physiological strategies and their connections to climate, and also point to the potential for shrubs to increase in abundance in response to increased climatic variability in drylands, given shrubs' ability to respond rapidly to changing conditions.

Effects of excess ammoniacal nitrogen (NH4+-N) on pigments, photosynthetic rates, chloroplast ultrastructure, proteomics, formation of reactive oxygen species and enzymatic activity in submerged plant Hydrilla verticillata (L.f.) Royle

Although excess ammoniacal-nitrogen (NH4+-N) results in the disturbance of various important biochemical and physiological processes, a detailed study on the effects of NH4+-N stress on the photosynthesis and global changes in protein levels in submerged macrophytes is still lacking. Here, the changes of excess NH4+-N on physiological parameters in Hydrilla verticillata (L.f.) Royle, a submerged macrophyte were investigated, including the contents of photosynthetic pigments, soluble sugars, net photosynthesis and respiration, glutamine synthetase (GS) and glutamate synthase (GOGAT) activities, chloroplast ultrastructure, chloroplast reactive oxygen species (ROS) accumulation and protein levels. Our results showed that the net photosynthetic rate and pigment content reached maximum values when the plants were treated with 1 and 2 mg L-1 NH4+-N, respectively, and decreased at NH4+-N concentrations at 5, 10, 15 and 20 mg L-1. This decrease might be caused by ROS accumulation. Compared that in 0.02 mg L-1 NH4+-N as a control, ROS generation in chloroplasts significantly increased in the presence of more than 2 mg L-1 NH4+-N. Consistently, the damages caused by over-accumulated ROS were observed in chloroplast ultrastructure, showing a loose thylakoid membranes and swollen grana/stroma lamellae. Furthermore, through proteomic analysis, we identified 91 differentially expressed protein spots. Among them, six proteins involved in photosynthesis decreased in abundance in response to excess NH4+-N. Surprisingly, the abundance of all the identified proteins that were involved in nitrogen assimilation and amino acid metabolism tended to increase under excess NH4+-N compared with the control, suggestive of the imbalanced carbon and nitrogen (C-N) metabolisms. In support, activated GS and GOGAT cycle was observed, evidenced by higher activities of GS and GOGAT enzymes. To our knowledge, this work is the first description that excess NH4+-N results in chloroplast ultrastructural damages and the first proteomic evidence to support that excess NH4+-N can lead to a decline in photosynthesis and imbalance of C-N metabolism in submerged macrophytes.

Pervasive changes of mRNA splicing in upf1-deficient zebrafish identify rpl10a as a regulator of T cell development

The transcriptome of eukaryotic cells is constantly monitored for errors to avoid the production of undesired protein variants. The evolutionarily conserved nonsense-mediated mRNA decay (NMD) pathway degrades aberrant mRNAs, but also functions in the regulation of transcript abundance in response to changed physiological states. Here, we describe a zebrafish mutant of upf1, encoding the central component of the NMD machinery. Fish homozygous for the upf1t20450 allele (Y163X) survive until day 10 after fertilization, presenting with impaired T cell development as one of the most conspicuous features of the mutant phenotype. Analysis of differentially expressed genes identified dysregulation of the pre-mRNA splicing pathway, accompanied by perturbed autoregulation of canonical splicing activators (SRSF) and repressors (HNRNP). In upf1-deficient mutants, NMD-susceptible transcripts of ribosomal proteins that are known for their role as noncanonical splicing regulators were greatly increased, most notably, rpl10a When the levels of NMD-susceptible rpl10a transcripts were artificially increased in zebrafish larvae, T cell development was significantly impaired, suggesting that perturbed autoregulation of rpl10a splicing contributes to failing T cell development in upf1 deficiency. Our results identify an extraribosomal tissue-specific function to rpl10a in the immune system, and thus exemplify the advantages of the zebrafish model to study the effects of upf1-deficiency in the context of a vertebrate organism.

Transcriptional Basis for Differential Thermosensitivity of Seedlings of Various Tomato Genotypes.

Transcriptional reprograming after the exposure of plants to elevated temperatures is a hallmark of stress response which is required for the manifestation of thermotolerance. Central transcription factors regulate the stress survival and recovery mechanisms and many of the core responses controlled by these factors are well described. In turn, pathways and specific genes contributing to variations in the thermotolerance capacity even among closely related plant genotypes are not well defined. A seedling-based assay was developed to directly compare the growth and transcriptome response to heat stress in four tomato genotypes with contrasting thermotolerance. The conserved and the genotype-specific alterations of mRNA abundance in response to heat stress were monitored after exposure to three different temperatures. The transcripts of the majority of genes behave similarly in all genotypes, including the majority of heat stress transcription factors and heat shock proteins, but also genes involved in photosynthesis and mitochondrial ATP production. In turn, genes involved in hormone and RNA-based regulation, such as auxin- and ethylene-related genes, or transcription factors like HsfA6b, show a differential regulation that associates with the thermotolerance pattern. Our results provide an inventory of genes likely involved in core and genotype-dependent heat stress response mechanisms with putative role in thermotolerance in tomato seedlings.

Holocene peatland water regulation response to ~1000-year solar cycle indicated by phytoliths in central China

Peatland ecosystem processes are strongly influenced by hydrology linked to climate change. However, how transpiration, as major water loss pathway in closed peatland, responds to climate change and then regulates ecosystem water balance that remains poorly understood. Here, we reported an 18,000-year fossil phytolith record from an herbaceous community-dominated mountain peatland in central China to reconstruct climate changes and vegetation evolution and reveal the interactions between regional climate changes and peatland ecosystem. The abundance of bulliform phytoliths—a silicified type of cells that regulate the movements of plant leaves to reduce light exposure and transpiration rate—shows close correlations with the Holocene climate variations with higher bulliform abundance in response to warm-dry climate (11,500–9600 cal yr BP; 7500–3000 cal yr BP) and lower values associated with cold-wet climate (13,000–11,500 cal yr BP; 3000 cal yr BP-present). Spectral analysis reveals that bulliform abundance andreconstructed climate vary with a major ~1000-year periodicity during the Holocene, suggesting a possible causal relationship to solar activity. A high bulliform abundance and warm-dry climate correspond with enhanced solar activity, and vice versa. We interpret that the resultant leaf water deficit resulted from greater light interception, high temperature anddrought promoted the production of bulliform cells to fold leaf for water conservation, which is an effective protective mechanism of peatland grasses from the environmental stress. These results expand our understanding of how grass-dominated peatland plant water regulation recorded by bulliform phytoliths responds to solar radiation and local hydroclimate during geological period.

Proteomics, physiological, and biochemical analysis of cross tolerance mechanisms in response to heat and water stresses in soybean.

Water stress (WS) and heat stress (HS) have a negative effect on soybean plant growth and crop productivity. Changes in the physiological characteristics, proteome, and specific metabolites investigated on molecular and cellular functions were studied in two soybean cultivars exposed to different heat and water stress conditions independently and in combination. Leaf protein composition was studied using 2-DE and complemented with MALDI TOF mass spectrometry. While the two cultivars displayed genetic variation in response to water and heat stress, thirty-nine proteins were significantly altered in their relative abundance in response to WS, HS and combined WS+HS in both cultivars. A majority of these proteins were involved in metabolism, response to heat and photosynthesis showing significant cross-tolerance mechanisms. This study revealed that MED37C, a probable mediator of RNA polymerase transcription II protein, has potential interacting partners in Arabidopsis and signified the marked impact of this on the PI-471938 cultivar. Elevated activities in antioxidant enzymes indicate that the PI-471938 cultivar can restore the oxidation levels and sustain the plant during the stress. The discovery of this plant's development of cross-stress tolerance could be used as a guide to foster ongoing genetic modifications in stress tolerance.

Trajectories of Changes in Phytoplankton Biomass, Phaeocystis globosa and Diatom (incl. Pseudo-nitzschia sp.) Abundances Related to Nutrient Pressures in the Eastern English Channel, Southern North Sea

The phytoplankton compartment is particularly reactive to changes in nutrient concentration and is used as a quality indicator. Using a simple numerical approach, the response of emblematic harmful taxa from the eastern English Channel and southern North Sea to changes in nutrient inputs was studied. The method is based on a diachronic approach using averaged maxima over sliding periods of six years (1994–2018). This gave a final dataset containing pairs of points (number of years) for explained and explanatory variables. The temporal trajectory of the relationship between each pair of variables was then highlighted. Changes were represented as long-term trajectories that allowed a comparison to a reference/average situation. In addition, the relevance of the use of Phaeocystis globosa and the Pseudo-nitzchia complex as eutrophication species indicators was tested. Results showed a significant shift in the 2000s and different trajectories between diatoms and P. globosa abundances in response to changes in Dissolved Inorganic Nitrogen (DIN). The contrasting ecosystems under study reacted differently depending on the initial pressure. While a return to good ecological status does not seem feasible in the short term, it seems that these ecosystems were in an unstable intermediate state requiring continued efforts to reduce nutrient inputs.

The role of perennation traits in plant community soil frost stress responses.

Herbaceous plants can survive periods of prolonged freezing as below-ground structures or seed, which can be insulated from cold air by soil, litter or snow. Below-ground perennial structures vary in both form and their exposure to soil frost, and this structural variation thus may be important in determining the responses of plant communities to frost stress. We conducted a suite of snow removal experiments in a northern temperate old field over 3 years to examine the relative freezing responses of different plant functional groups based on below-ground perennation traits. A litter removal treatment was added in the third year. Species-level percentage cover data were recorded in May, June and September then pooled by functional group. Snow removal decreased total plant cover, and this response was particularly strong and consistent among years for tap-rooted and rhizomatous species. The snow removal responses of cover for plants with root buds and new recruits from seed varied from positive to negative among years. The cover of rootstock plants consistently increased in response to snow removal. Rhizomatous species were generally the most vulnerable to litter removal. This study is the first to explore the effects of variation in frost severity on the responses of different plant perennation trait functional groups. The responses of herbaceous species to frost may become increasingly important in northern temperate regions in the coming decades as a result of declining snow cover and increasing temperature variability. Our results reveal substantial variation in responses among perennation trait functional groups, which could drive changes in species abundance in response to variation in soil frost.

Phosphoproteomics of Aspergillus fumigatus Exposed to the Antifungal Drug Caspofungin.

Aspergillus fumigatus is an opportunistic and allergenic pathogenic fungus, responsible for fungal infections in humans. A. fumigatus infections are usually treated with polyenes, azoles, or echinocandins. Echinocandins, such as caspofungin, can inhibit the biosynthesis of the β-1,3-glucan polysaccharide, affecting the integrity of the cell wall and leading to fungal death. In some A. fumigatus strains, caspofungin treatment at high concentrations induces an increase of fungal growth, a phenomenon called the caspofungin paradoxical effect (CPE). Here, we analyze the proteome and phosphoproteome of the A. fumigatus wild-type strain and of mitogen-activated protein kinase (MAPK) mpkA and sakA null mutant strains during CPE (2 μg/ml caspofungin for 1 h). The wild-type proteome showed 75 proteins and 814 phosphopeptides (corresponding to 520 proteins) altered in abundance in response to caspofungin treatment. The ΔmpkA (ΔmpkA caspofungin/wild-type caspofungin) and ΔsakA (ΔsakA caspofungin/wild-type caspofungin) strains displayed 626 proteins and 1,236 phosphopeptides (corresponding to 703 proteins) and 101 proteins and 1,217 phosphopeptides (corresponding to 645 proteins), respectively, altered in abundance. Functional characterization of the phosphopeptides from the wild-type strain exposed to caspofungin showed enrichment for transcription factors, protein kinases, and cytoskeleton proteins. Proteomic analysis of the ΔmpkA and ΔsakA mutants indicated that control of proteins involved in metabolism, such as in production of secondary metabolites, was highly represented in both mutants. Results of functional categorization of phosphopeptides from both mutants were very similar and showed a high number of proteins with decreased phosphorylation of proteins involved in transcriptional control, DNA/RNA binding, cell cycle control, and DNA processing. This report reveals novel transcription factors involved in caspofungin tolerance.IMPORTANCEAspergillus fumigatus is an opportunistic human-pathogenic fungus causing allergic reactions or systemic infections, such as invasive pulmonary aspergillosis in immunocompromised patients. Caspofungin is an echinocandin that impacts the construction of the fungal cell wall by inhibiting the biosynthesis of the β-1,3-glucan polysaccharide. Caspofungin is a fungistatic drug and is recommended as a second-line therapy for treatment of aspergillosis. Treatment at high concentrations induces an increase of fungal growth, a phenomenon called the caspofungin paradoxical effect (CPE). Collaboration between the mitogen-activated protein kinases (MAPK) of the cell wall integrity (MapkA) and high-osmolarity glycerol (SakA) pathways is essential for CPE. Here, we investigate the global proteome and phosphoproteome of A. fumigatus wild-type, ΔmpkA, and ΔsakA strains upon CPE. This study showed intense cross talk between the two MAPKs for the CPE and identified novel protein kinases and transcription factors possibly important for CPE. Increased understanding of how the modulation of protein phosphorylation may affect the fungal growth in the presence of caspofungin represents an important step in the development of new strategies and methods to combat the fungus inside the host.

Intensive grazing enhances grasshopper fitness and abundance in a meadow steppe

Grazing management plays an important role in grassland conservation. Given that grasshoppers are key components in the grassland food web, various studies have been conducted to investigate the effects of grazing by large herbivores on grasshoppers at population and community levels. However, grazing effects on grasshopper fitness and abundance remain poorly understood. Here, using a field experiment in a meadow steppe, we examined the effects of sheep grazing, with different intensities, on grasshopper (Euchorthippus unicolor) fitness and abundance. Results showed that female grasshopper’s survival rate, mean survival time, and egg production were positively associated with increasing grazing intensities. The positive relationships are likely due to changes in plant nitrogen content and microhabitat induced by large herbivore grazing activities for grasshoppers. Moreover, there were strong positive associations between the fitness and abundance of female grasshoppers, and between female and total grasshopper abundance, which are responsible for an increase in overall grasshopper abundance. These findings improve our understanding about the role of grasshopper fitness in explaining their abundance in response to grazing management. Our study also suggests that measuring grasshopper fitness should be considered for species conservation in management practices of moderate grazing.