Abiotic Stress Tolerance Research Articles

Editorial: Advances in crop breeding for abiotic stress tolerance

Editorial: Advances in crop breeding for abiotic stress tolerance

Pan-genome wide identification and analysis of the SAMS gene family in sunflowers (Helianthus annuus L.) revealed their intraspecies diversity and potential roles in abiotic stress tolerance

IntroductionS-adenosylmethionine (SAM), a key molecule in plant biology, plays an essential role in stress response and growth regulation. Despite its importance, the SAM synthetase (SAMS) gene family in sunflowers (Helianthus annuus L.) remains poorly understood.MethodsIn this study, the SAMS genes were identified from the sunflower genome. Subsequently, the protein properties, gene structure, chromosomal location, cis-acting elements, collinearity, and phylogeny of the SAMS gene family were analyzed by bioinformatic methods. Finally, the expression patterns of SAMS genes in different tissues, under different hormonal treatment and abiotic stress were analyzed based on transcriptome data and qRT-PCR.ResultsThis study identified 58 SAMS genes across nine cultivated sunflower species, which were phylogenetically classified into seven distinct subgroups. Physicochemical properties and gene structure analysis showed that the SAMS genes are tightly conserved between cultivars. Collinearity analysis revealed segmental duplications as the primary driver of gene family expansion. The codon usage bias analysis suggested that natural selection substantially shapes the codon usage patterns of sunflower SAMS genes, with a bias for G/C-ending high-frequency codons, particularly encoding glycine, leucine, and arginine. Analysis of the cis-regulatory elements in promoter regions, implied their potential roles in stress responsiveness. Differential expression patterns for HanSAMS genes were observed in different tissues as well as under hormone treatment or abiotic stress conditions by analyzing RNA-seq data from previous studies and qRT-PCR data in our current study. The majority of genes demonstrated a robust response to BRA and IAA treatments in leaf tissues, with no significant expression change observed in roots, suggesting the response of HanSAMS genes to hormones is tissue-specific. Expression analyses under abiotic stresses demonstrated diverse expression profiles of HanSAMS genes, with HanSAMS5 showing significant upregulation in response to both drought and salt stresses.DiscussionThis comprehensive genomic and expression analysis provides valuable insights into the SAMS gene family in sunflowers, laying a robust foundation for future functional studies and applications in crop improvement for stress resilience.

Advancing Chickpea Breeding: Omics Insights for Targeted Abiotic Stress Mitigation and Genetic Enhancement.

Chickpea is a major source of proteins and is considered the most economically vital food legume. Chickpea production is threatened by several abiotic and biotic factors worldwide. The main constraints limiting worldwide chickpea production are abiotic conditions such as drought, heat, salinity, and cold. It is clear that chickpea is treasured for its nutritive value, in particular its high protein content, and hence study of problems like drought, cold and salinity stresses are very important concerning chickpeas. In this regard, several physiological, biochemical, and molecular mechanisms are reviewed to confer tolerance to abiotic stress. The most crippling economic losses in agriculture occur due to these abiotic stressors, which affect plants in many ways. All these abiotic stresses affect the water relations of the plant, both at the cellular level as well as the whole-plant level, causing both specific and non-specific reactions, damage and adaptation reactions. These stresses share common features. Breeding programs use a huge collection of over 100,000 chickpea accessions as their foundation. Significant advancements in conventional breeding, including mutagenesis, gene/allele introgression, and germplasm introduction, have been made through this method. Abiotic tolerance and yield component selection are made easier by creating unique DNA markers for the genus Cicer, which has been made possible by developments in high-throughput sequencing and molecular biology. Transcriptomics, proteomics, and metabolomics have also made it possible to identify particular genes, proteins, and metabolites linked to chickpea tolerance to abiotic stress. Chickpea abiotic stress tolerance has been directly and potentially improved by biotechnological applications, which are covered by all 'Omics' approaches. It requires information on the abiotic stress response at the different molecular levels, which comprises gene expression analysis for metabolites or proteins and its impact on phenotype. Studies on chickpea genome-wide expression profiling have been conducted to determine important candidate genes and their regulatory networks for abiotic stress response. This study aimed to offer a detailed overview of the diverse 'Omics' approaches for resilience's to abiotic stresses on chickpea plants.

Genome-wide identification and analysis of ERF transcription factors related to abiotic stress responses in Nelumbo nucifera

BackgroundEthylene-responsive factor (ERF) transcription factors belong to the APETALA2/ERF (AP2/ERF) superfamily, and play crucial roles in plant development process and stress responses. However, the function of ERF proteins (especially for their role in response to abiotic stresses) remains scarce in Nelumbo nucifera, which is an important aquatic plant with high ornamental, economic, and ecological values.ResultsA total of 107 ERF genes were identified from the N. nucifera genome, and phylogenetic analysis classified these genes into 11 groups. The NnERF genes in the same group exhibited similar gene structure and conserved motifs, and they were unevenly distributed across the 8 chromosomes, with three pairs of tandem duplications and 21 pairs of segmental duplications. Synteny analysis revealed 44 and 39 of NnERF genes were orthologous to those in Arabidopsis thaliana and Oryza sativa, respectively. Tissue-specific expression patterns analysis of NnERF showed that 26 NnERF genes were expressed in all tested tissues, in which five genes exhibited high expression levels. Furthermore, 16 NnERF genes were selected for exploring their responses to different abiotic stresses, including cold, salt, drought, and Cd stresses. qRT-PCR analysis revealed that all these 16 investigated genes were regulated by at least one stress treatment, and 12 genes responded to all the stress treatments with different expression patterns or levels, suggesting their potential roles in diverse abiotic stress tolerance of N. nucifera. Additionally, two representative stress-related NnERFs (Nn3g19628 and Nn1g06033) were confirmed to be nuclear-localized proteins and displayed transcriptional activation.ConclusionsIn this study, we conducted a genome-wide identification and analysis of NnERF gene family related to abiotic stress responses in N. nucifera, which provides valuable information for further functional validation of these genes in stress responses, and forms a foundation for stress tolerance breeding in N. nucifera and other aquatic ornamental plants.

Genome-Wide Analysis of HECT E3 Ligases Members in Phyllostachys edulis Provides Insights into the Role of PeHECT1 in Plant Abiotic Stress Response

Homology to E6-AP Carboxy Terminus (HECT) E3 ubiquitin ligases play pivotal roles in plant growth, development, and responses to abiotic stresses. However, the function of HECT genes in Phyllostachys edulis (P. edulis) remains largely uninvestigated. In this study, a comprehensive genome-wide analysis of the HECT E3 ubiquitin ligases gene family in P. edulis was conducted, aiming to elucidate its evolutionary relationships and gene expansion. Analysis of gene structure, conserved motifs and domains, and synteny genome regions were performed. Furthermore, cis-elements in HECT gene promoters that respond to plant hormones and environmental stresses were identified and corroborated by expression data from diverse abiotic stress conditions and hormone treatments. Based on the co-expression network of PeHECTs under cold and dehydration stresses, PeHECT1 was identified as a key candidate gene associated with abiotic stress tolerance. Overexpression of PeHECT1 in tobacco leaves significantly upregulated genes related to reactive oxygen species (ROS) detoxification and polyamine biosynthesis. Yeast one-hybrid (Y1H), electrophoretic mobility shift assay (EMSA), and dual-luciferase (dual-LUC) assays suggested that the transcription factor ETHYLENE RESPONSE FACTOR 3 (PeERF3) bound to the dehydration-responsive element (DRE) of the promoter of PeHECT1 and activated its transcription activity. Phylogenetic analysis indicated that PeHECT1 in P. edulis exhibited a close association with the diploid herbaceous bamboo Olyra latifolia, followed by the divergence of rice and bamboo. In summary, this study enhances our comprehensive understanding of the HECT E3 ubiquitin ligases gene family in P. edulis and highlights the potential role of PeHECT1 in plant abiotic stress response.

An ABA biosynthesis enzyme gene OsNCED4 regulates NaCl and cold stress tolerance in rice

Rice (Oryza sativa L.) is susceptible to various abiotic stresses, such as salt, cold, and drought. Therefore, there is an urgent need to explore the relevant genes that enhance tolerance to these stresses. In this study, we identified a gene, OsNCED4 (9-cis-epoxycarotenoid dioxygenase 4), which regulates tolerance to multiple abiotic stresses. OsNCED4 encodes a chloroplast-localized abscisic acid (ABA) biosynthetic enzyme. The expression of OsNCED4 gene was significantly induced by 150 mM NaCl and cold stress. Disruption of OsNCED4 by CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)/Cas9-mediated mutagenesis resulted in significant sensitivity to NaCl and cold stress. The salt and cold sensitivity of osnced4 mutant was due to the reduction of ABA content and the excessive accumulation of reactive oxygen species (ROS) under stress. Moreover, OsNCED4 also regulates drought stress tolerance of rice seedlings. Taken together, these results indicate that OsNCED4 is a new regulator for multiple abiotic stress tolerance in rice, and provided a potential target gene for enhancing multiple stress tolerance in the future.

Bcl-2-Associated Athanogene (BAG) Co-chaperones: Key Players in Multiple Abiotic and Biotic Stress Tolerance in Plants

Bcl-2-Associated Athanogene (BAG) Co-chaperones: Key Players in Multiple Abiotic and Biotic Stress Tolerance in Plants

Applications of CRISPR Technologies in Forestry and Molecular Wood Biotechnology.

Forests worldwide are under increasing pressure from climate change and emerging diseases, threatening their vital ecological and economic roles. Traditional breeding approaches, while valuable, are inherently slow and limited by the long generation times and existing genetic variation of trees. CRISPR technologies offer a transformative solution, enabling precise and efficient genome editing to accelerate the development of climate-resilient and productive forests. This review provides a comprehensive overview of CRISPR applications in forestry, exploring its potential for enhancing disease resistance, improving abiotic stress tolerance, modifying wood properties, and accelerating growth. We discuss the mechanisms and applications of various CRISPR systems, including base editing, prime editing, and multiplexing strategies. Additionally, we highlight recent advances in overcoming key challenges such as reagent delivery and plant regeneration, which are crucial for successful implementation of CRISPR in trees. We also delve into the potential and ethical considerations of using CRISPR gene drive for population-level genetic alterations, as well as the importance of genetic containment strategies for mitigating risks. This review emphasizes the need for continued research, technological advancements, extensive long-term field trials, public engagement, and responsible innovation to fully harness the power of CRISPR for shaping a sustainable future for forests.

Emerging roles of auxin in plant abiotic stress tolerance.

Plants are continuously attacked by several biotic and abiotic factors. Among abiotic factors, heat, cold, drought, and salinity are common stresses. Plants produce several hormones as their main weapon in fightback against these stresses. Among these hormones, the role of auxin is well established in regulating plant growth and development at various scales. However, in recent literature, the important role of auxin in abiotic stress tolerance has emerged. Several auxin signalling and transport mutants exhibit heat, drought, and salinity-related phenotypes. Among them, auxin-mediated hypocotyl elongation and root growth in response to increased heat are of importance due to the continuous rise in global temperature. Auxin is also involved in regulating and recruiting specialized metabolites like aliphatic glucosinolate to defend themselves from drought stress. Aliphatic glucosinolate (A-GLS) regulates guard cell closure using auxin, which is independent of the major abiotic stress hormone abscisic acid. This regulatory mechanism serves as an additional layer of guard cell movement to protect plants from drought. Transferring the aliphatic glucosinolate pathway into non-brassica plants such as rice and soybean holds the promise to improve drought tolerance. In addition to these, post-translational modification of auxin signalling components and redistribution of auxin efflux transporters are also playing important roles in drought and salt tolerance and, hence, may be exploited to breed drought-tolerant crops. Also, reactive oxygen species, along with peptide hormone and auxin signalling, are important in root growth under stress. In conclusion, we summarize recent discoveries that suggest auxin is involved in various abiotic stresses.

Identifying Calmodulin and Calmodulin-like Protein Members in Canavalia rosea and Exploring Their Potential Roles in Abiotic Stress Tolerance.

Calmodulins (CaMs) and calmodulin-like proteins (CMLs) belong to families of calcium-sensors that act as calcium ion (Ca2+) signal-decoding proteins and regulate downstream target proteins. As a tropical halophyte, Canavalia rosea shows great resistance to multiple abiotic stresses, including high salinity/alkalinity, extreme drought, heat, and intense sunlight. However, investigations of calcium ion signal transduction involved in the stress responses of C. rosea are limited. The CaM and CML gene families have been identified and characterized in many other plant species. Nevertheless, there is limited available information about these genes in C. rosea. In this study, a bioinformatic analysis, including the gene structures, conserved protein domains, phylogenetic relationships, chromosome distribution, and gene synteny, was comprehensively performed to identify and characterize CrCaMs and CrCMLs. A spatio-temporal expression assay in different organs and environmental conditions was then conducted using the RNA sequencing technique. Additionally, several CrCaM and CrCML members were then cloned and functionally characterized using the yeast heterogeneous expression system, and some of them were found to change the tolerance of yeast to heat, salt, alkalinity, and high osmotic stresses. The results of this study provide a foundation for understanding the possible roles of the CrCaM and CrCML genes, especially for halophyte C. rosea's natural ecological adaptability for its native habitats. This study also provides a theoretical basis for further study of the physiological and biochemical functions of plant CaMs and CMLs that are involved in tolerance to multiple abiotic stresses.

African Horned Melon (Cucumis metuliferus): Climate‐Resilient Crop and Gene Donor in the Breeding of Major Cucurbits

ABSTRACTAfrican horned melon (Cucumis metuliferus E. Meyer ex Naudin, 2n = 2x = 24) is an under‐researched and under‐utilised cucurbit crop primarily grown for its nutritious fruit. In its centre of diversity, the crop is valued for its relatively high tolerance to insect pests, diseases, drought and heat stress. It is a potential opportunity crop and a valuable source of genes to major Cucumis species, including cucumber (Cucumis sativas L.) and melon (C. melo L.). Its climate resilience and nutrient‐rich fruit provide niche market opportunities. Hence, production and value‐adding will make African horned melon a crop of choice globally. There is a need for an in‐depth investigation into the genetic diversity, breeding and food composition of the crop. Therefore, the objective of this review was to provide perspectives on the production and breeding status of African horned melon to appraise its genetic value for human welfare, strategic production, genetic conservation and breeding of market‐preferred varieties, including closely related Cucumis species. The first section described the botany, production status, germplasm resources and characterisation based on phenotypic and genetic markers. This is followed by breeding progress for biotic and abiotic stress tolerance, utilities and challenges of gene transfer and potential rootstock to Cucumis species, especially cucumber and melon. The review summarised the main breeding goals and approaches, including mutation breeding to fast‐track the development of new varieties. Information presented in the review will guide cultivar design in African horned melon or related cucurbits, aiming for superior agronomic and nutritional quality traits and tolerance to biotic and abiotic stresses.

MYB30-INTERACTING E3 LIGASE 1 regulates LONELY GUY 5-mediated cytokinin metabolism to promote drought tolerance in cotton

Abstract Ubiquitination plays important roles in modulating the abiotic stress tolerance of plants. Drought seriously restricts agricultural production, but how ubiquitination participates in regulating drought tolerance remains largely unknown. Here, we identified a drought-inducible gene, MYB30-INTERACTING E3 LIGASE 1 (GhMIEL1), which encodes a RING E3 ubiquitin ligase in cotton (Gossypium hirsutum). GhMIEL1 was strongly induced by polyethylene glycol (PEG-6000) and the phytohormone abscisic acid (ABA). Overexpression and knockdown of GhMIEL1 in cotton substantially enhanced and reduced drought tolerance, respectively. GhMIEL1 interacted with the MYB transcription factor GhMYB66 and could ubiquitinate and degrade it in vitro. GhMYB66 directly bound to the LONELY GUY 5 (GhLOG5) promoter, a gene encoding cytokinin riboside 5'-monophosphate phosphoribohydrolase, to repress its transcription. Overexpression of GhMIEL1 and silencing of GhMYB66 altered the homeostasis of cytokinin of plant roots, increased total root length and number of root tips, and enhanced plant drought tolerance. Conversely, silencing GhLOG5 decreased total root length and number of root tips and reduced plant drought tolerance. Our studies reveal that the GhMIEL1-GhMYB66-GhLOG5 module positively regulates drought tolerance in cotton, which deepens our understanding of plant ubiquitination-mediated drought tolerance and provides insights for improving drought tolerance.

Effects of Biostimulants on the Eco-Physiological Traits and Fruit Quality of Black Chokeberry (Aronia melanocarpa L.).

Biostimulants contribute to the physiological growth of plants by enhancing the quality characteristics of fruit without harming the environment. In addition, biostimulants applied to plants strengthen nutritional efficiency, abiotic stress tolerance, and fruit biochemical traits. We investigated the effectiveness of specific organic biostimulants. Five treatments were tested: (1) control (H2O, no biostimulants); (2) Magnablue + Keyplex 350 (Mgl + Kpl350); (3) Cropobiolife + Keyplex 120 (Cpl + Kpl120); (4) Keyplex 120 (Kpl120); and (5) Magnablue + Cropobiolife + Keyplex 120 (Mgl + Cpl + Kpl120) on the mineral uptake and physiology in black chokeberry (Aronia) plants, as well as the quality of their berries. The different treatments were applied to three-year-old chokeberry plants, and the experimental process in the field lasted from May to September 2022 until the harvest of ripe fruits. Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) revealed that the fifth treatment significantly increased concentrations of P, Ca, and K. Additionally, the fifth treatment enhanced photochemical efficiency (Fv/Fm), water-splitting efficiency (Fv/Fo) in PSII, and the performance index (PI) of both PSI and PSII in chokeberry leaves. Improvements in photosynthesis, such as CO2 assimilation (A), transpiration (E), and water-use efficiency (A/E), were also noted under biostimulant applications. Upon harvesting the ripe fruits, part of them was placed at room temperature at 25 °C, while the rest were stored at 4 °C, RH 90% for 7 days. The cultivation with biostimulants had beneficial effects on the maintenance of flesh consistency, ascorbic acid concentration, and weight of berries at 4 and 25 °C, especially in the 5th treatment. Moreover, the total antioxidant capacity, anthocyanin concentration, and total phenols of the berries were notably higher in the third and fifth treatments compared to the control. These data suggest that selecting appropriate biostimulants can enhance plant yield and fruit quality by potentially activating secondary metabolite pathways.

Multi-omics approaches for abiotic stress tolerance in rice (Oryza sativa L.)

Rice, one of the world's staple crops, faces significant challenges due to abiotic stresses such as drought, salinity and extreme temperatures, which threaten global food security. Traditional breeding methods have limitations in developing stress-tolerant rice varieties within a short time frame. Thus, there is a growing interest in employing multi-omics approaches, integrating genomics, transcriptomics, proteomics, metabolomics and epigenomics, to unravel the complex molecular mechanisms underlying abiotic stress tolerance in rice. In contrast to a single-omics method, this combination of multi-dimensional approaches provides an extensive understanding of cellular dynamics under abiotic stress conditions. This review discusses recent advances in multi-omics technologies and their applications in dissecting the molecular responses of rice to abiotic stresses. It highlights the integration of multi-omics data to identify critical genes, pathways and regulatory networks involved in stress responses and tolerance mechanisms.Furthermore, it explores the potential of multi-omics-assisted breeding strategies for developing stress-tolerant rice varieties with improved agronomic traits. The challenges and future perspectives in utilizing multi-omics approaches to enhance rice's abiotic stress tolerance are also discussed. Overall, multi-omics approaches offer a comprehensive platform to understand the molecular basis of stress tolerance in rice and accelerate the development of resilient varieties to ensure global food security.

Analysis of Stress Response Genes in Microtuberization of Potato Solanum tuberosum L.: Contributions to Osmotic and Combined Abiotic Stress Tolerance.

Wild Solanum species have contributed many introgressed genes during domestication into current cultivated potatoes, enhancing their biotic and abiotic stress resistance and facilitating global expansion. Abiotic stress negatively impacts potato physiology and productivity. Understanding the molecular mechanisms regulating tuber development may help solve this global problem. We made a transcriptomic analysis of potato microtuberization under darkness, cytokinins, and osmotic stress conditions. A protein-protein interaction (PPI) network analysis identified 404 genes with high confidence. These genes were involved in important processes like oxidative stress, carbon metabolism, sterol biosynthesis, starch and sucrose metabolism, fatty acid biosynthesis, and nucleosome assembly. From this network, we selected nine ancestral genes along with eight additional stress-related genes. We used qPCR to analyze the expression of the selected genes under osmotic, heat-osmotic, cold-osmotic, salt-osmotic, and combined-stress conditions. The principal component analysis (PCA) revealed that 60.61% of the genes analyzed were associated with osmotic, cold-osmotic, and heat-osmotic stress. Seven out of ten introgression/domestication genes showed the highest variance in the analysis. The genes H3.2 and GAPCP1 were involved in osmotic, cold-osmotic, and heat-osmotic stress. Under combined-all stress, TPI and RPL4 were significant, while in salt-osmotic stress conditions, ENO1, HSP70-8, and PER were significant. This indicates the importance of ancestral genes for potato survival during evolution. The targeted manipulation of these genes could improve combined-stress tolerance in potatoes, providing a genetic basis for enhancing crop resilience.

Gene isolation and expression analysis of galactinol synthase from proso millet (Panicum miliaceum L.)

Abstract Drought is the major devastating stress affecting plant growth and development. The plant develops some physiological and biochemical changes to withstand drought. The raffinose family of oligosaccharides (RFOs) are sugars that have a significant role in abiotic stress tolerance. Galactinol synthase (EC 2.4.1.123; GolS) initiates the primary step of the RFOs synthesis. Their accumulation implies a role for RFOs in abiotic stress adaptation. The galactinol synthase gene from proso millet was isolated and characterized. Full length proso millet galactinol synthase gene of size ~1,200 bp having 3 exons with 2 introns was isolated and predicted using bioinformatics tools. A high sequence similarity was observed at 97.2, 95.6, 91.8 and 85.4% with Panicum hallii, Panicum virgatum, Setaria italica and Zea mays mRNA, respectively. PmGolS gene expression pattern with respect to drought stress was evaluated in proso millet. PmGolS gene was highly expressed, 40.3 and 23.7-fold in vegetative and reproductive stages of drought-stressed plants respectively compared to control. It suggested that PmGolS gene has an active role in drought stress tolerance.

Plant membrane transporters function under abiotic stresses: a review.

In the present review, we discussed the detailed signaling cascades via membrane transporters that confer plant tolerance to abiotic stresses and possible significant use in plant development for climate-resilient crops. Plant transporters play significant roles in nutrient uptake, cellular balance, and stress responses. They facilitate the exchange of chemicals and signals across the plant's membrane by signal transduction, osmotic adjustment, and ion homeostasis. Therefore, research into plant transporters is crucial for understanding the mechanics of plant stress tolerance. Transporters have potential applications in crop breeding for increased stress resistance. We discuss new results about various transporter families (ABC, MATE, NRAMP, NRT, PHT, ZIP), including their functions in abiotic stress tolerance and plant development. Furthermore, we emphasize the importance of transporters in plant responses to abiotic stresses such as drought, cold, salt, and heavy metal toxicity, low light, flooding, and nutrient deficiencies. We discuss the transporter pathways and processes involved in diverse plant stress responses. This review discusses recent advances in the role of membrane transporters in abiotic stress tolerance in Arabidopsis and other crops. The review contains the genes discovered in recent years and associated molecular mechanisms that improve plants' ability to survive abiotic stress and their possible future applications by integrating membrane transporters with other technologies.

Enhanced climate change resilience on wheat anther morphology using optimized deep learning techniques.

Wheat commands attention due to its significant impact on culture, nutrition, the economy, and the guarantee of food security. The anticipated rise in temperatures resulting from climate change is a key factor contributing to food insecurity, as it markedly reduces wheat harvests. Terminal heat stress mostly affects spike fertility in wheat, specifically influencing pollen fertility and anther morphology. This research especially focuses on the shape of anthers and examines the effects of heat stress. The DinoLite Microscope's high-resolution images are used to measure the length and width of wheat anthers. By using object identification techniques, the research accurately measures the length and width of each anther in images, offering valuable insights into the differences between various wheat varieties. Furthermore, Deep Learning (DL) methodologies are utilized to enhance agriculture, specifically employing record categorization to advance plant breeding management. Given the ongoing challenges in agriculture, there is a belief that incorporating the latest technologies is crucial. The primary objective of this study is to explore how Deep Learning algorithms can be beneficial in categorizing agricultural records, particularly in monitoring and identifying variations in spring wheat germplasm. Various Deep Learning algorithms, including Convolution Neural Network (CNN), LeNet, and Inception-V3 are implemented to classify the records and extract various patterns. LeNet demonstrates optimized accuracy in classifying the records, outperforming CNN by 52% and Inception-V3 by 70%. Moreover, Precision, Recall, and F1 Measure are utilized to ascertain accuracy levels. The investigation also enhances our comprehension of the distinct roles played by various genes in abiotic stress tolerance among diverse wheat varieties. The outcomes of the research hold the potential to transform agricultural practices by introducing a more effective, data-driven approach to plant breeding management.

Harnessing Genomic Resources and Molecular Breeding Techniques for Advancing Crop Resilience and Productivity

Crop improvement and adaptation are critical to ensure global food security in the face of climate change, population growth, and resource limitations. Exploiting genomic resources and molecular breeding techniques offers immense potential to accelerate the development of resilient, high-yielding crop varieties. This review provides an overview of the current state and future prospects of leveraging genomics and molecular breeding for crop improvement, with a focus on major food crops. We discuss key genomic resources such as reference genomes, transcriptomes, and pan-genomes, as well as powerful molecular breeding approaches like marker-assisted selection, genomic selection, and genome editing. Integrating these tools into crop breeding pipelines can greatly enhance the precision and efficiency of developing improved varieties with desirable traits such as abiotic stress tolerance, disease resistance, and enhanced nutritional quality. We also highlight successful examples of applying these techniques in crops like rice, wheat, maize, and legumes. Furthermore, we explore the role of big data, machine learning, and systems biology in extracting actionable insights from the vast genomic data being generated. Finally, we discuss the challenges and opportunities in translating genomic discoveries into improved crop varieties, emphasizing the need for multidisciplinary collaborations, capacity building, and public-private partnerships. Harnessing the power of genomics and molecular breeding will be pivotal in developing climate-resilient crops to feed the growing global population sustainably.

Evaluating Native Bacillus Strains as Potential Biocontrol Agents against Tea Anthracnose Caused by Colletotrichum fructicola

Anthracnose of the tea plant (Camellia sinensis), caused by Colletotrichum spp., poses a significant threat to both the yield and quality of tea production. To address this challenge, researchers have looked to the application of endophytic bacteria as a natural alternative to the use chemical pesticides, offering potential for enhancing disease resistance and abiotic stress tolerance in tea plants. This study focused on identifying effective microbial agents to combat tea anthracnose caused by Colletotrichum fructicola. A total of 38 Bacillus-like strains were isolated from the tea rhizosphere, with 8 isolates showing substantial inhibitory effects against the mycelial growth of C. fructicola, achieving an average inhibition rate of 60.68%. Among these, strain T3 was particularly effective, with a 69.86% inhibition rate. Through morphological, physiological, and biochemical characterization, along with 16S rRNA gene phylogenetics analysis, these strains were identified as B. inaquosorum (T1 and T2), B. tequilensis (T3, T5, T7, T8, and T19), and B. spizizenii (T6). Biological and molecular assays confirmed that these strains could induce the expression of genes associated with antimicrobial compounds like iturin, fengycin, subtilosin, and alkaline protease, which effectively reduced the disease index of tea anthracnose and enhanced tea plant growth. In conclusion, this study demonstrates that B. inaquosorum, B. tequilensis, and B. spizizenii strains are promising biocontrol agents for managing tea anthracnose.