Abiotic Research Articles

Life's a ditch: demographic history and environmental factors shape fine-scale local adaptation within small populations of brook trout

Many studies have investigated the loss of adaptive potential in endangered or exploited species experiencing recent population declines. Less research has studied adaptive genomic variation in small populations known to have persisted for long periods, despite the unique contribution that such populations provide for determining mechanisms underlying population persistence in evolutionary and conservation modeling. Small populations of Brook trout (Salvelinus fontinalis) have persisted in Cape Race, Newfoundland for >12,000 years. We used genotyping-by-sequencing data to investigate the demographic history and adaptive genomic variation of 26 populations with effective population sizes (Ne) ranging from 11 to 442, and to explore mechanisms underlying long-term persistence. We show that all populations experienced demographic declines following postglacial colonization but have remained in their current, small Ne state for thousands of years. We also reveal greater homozygosity in adaptive alleles within the smallest populations and found signatures of adaptive divergence in small populations relating to several abiotic and biotic factors. Our study illustrates how the demographic history of a species can influence the adaptive dynamics of small populations persisting over long time periods.

Seasonal changes in the viability and abundance of bacterial cells in the snowpack ecosystem of a High Arctic ice cap

ABSTRACT Microbes play an essential role in nutrient turnover within Arctic environments, and their contribution to biogeochemical cycles can depend on several factors, including but not limited to cell viability. In this study, we employed the SYBR-PI dual cell stain to epifluorescence microscopy to enumerate proportions of potentially viable and non-viable bacterial cell populations within a melting snowpack on an ice cap, Foxfonna in Svalbard. Non-viable cells dominated on Foxfonna (2.5 ± 0.36 × 107 cells m−2) during the June to early July period, when biological production was usually at its peak. Furthermore, non-viable cells also dominated the total cell abundance within superimposed ice (223 ± 242 cells mL−1) and glacial ice (695 ± 717 cells mL−1) beneath the snow. We propose that the rapid, early loss of cell viability was caused by a number of abiotic and biotic factors. Hence, necromass (dead cell residue) contributed to the export of organic matter to downstream ecosystems.

Application of Bayesian Causal Inference in the Study of the Relationship Between Biodiversity and Aboveground Biomass of Subtropical Forest in Eastern China

The relationship between biodiversity and ecosystem function is crucial for understanding the structure and processes of subtropical forest ecosystems. However, the extent to which biodiversity influences subtropical forest biomass remains unclear. This study applies Bayesian causal inference to explore causal relationships between forest Aboveground Biomass (AGB) and its potential driving factors (biodiversity factors, biotic factors and abiotic factors) based on Huangshan Forest Dynamics Plots. Furthermore, hypothetical interventions are introduced to these driving factors within the causal network to estimate their potential impact on AGB. The causal relationship network reveals that species diversity and functional diversity are the most direct factors influencing AGB, whereas phylogenetic diversity exerts only an indirect effect. Biotic and abiotic factors also contribute indirect effects on AGB, potentially by influencing other mediating indexes. Intervention analysis shows that with low-level interventions on direct influencing factors, the probability of low AGB is as high as 84%. As the intervention level increases to high, the probability of low AGB decreases by 36%. Moreover, AGB demonstrates a particularly sensitive response to changes in Rao’s quadratic entropy (RaoQ) intervention levels, more so than to other factors, highlighting its critical role in maintaining forest biomass. Therefore, we contend that functional diversity, due to its direct reflection of species’ roles in ecosystem processes, is a more accurate measure of the impact of biodiversity on biomass compared to species or phylogenetic diversity and the interplay between abiotic and biotic factors and biodiversity should not be overlooked. This approach offers a powerful tool for exploring causal relationships, thereby providing a more nuanced and accurate understanding of the relationship between biodiversity and forest ecosystem function.

Diversity of Improved Diploids and Commercial Triploids from Musa spp. via Molecular Markers

Banana breeding consists of obtaining diploid, triploid, and tetraploid intra- and interspecific hybrids by conventional breeding methods with the objective of aggregating characteristics of agronomic and commercial interest. Given the narrow genetic base of bananas, Embrapa’s Banana Genetic Breeding Program (BGBP) aims at crosses between improved diploids (ID) (ID × ID) and between improved diploids (ID) and commercial triploids (ID × CTP) and tetraploids (ID × CTT), in order to increase the genetic base and variability in bananas regarding agronomic traits of interest and resistance to main biotic and abiotic factors. These improved diploids are resistant to main fungal diseases such as yellow (YSD) and black Sigatoka (BSD) disease and Fusarium wilt (race 1 and subtropical race 4), the latter being one of the most devastating diseases in bananas. The genetic diversity between 22 improved diploids and seven commercial banana triploids was analyzed using DNA molecular markers. Five IRAP (Inter-Retrotransposon Amplified Polymorphism, 7 ISSR (Inter-Simple Sequence Repeats) and 12 SSR (Simple Sequence Repeat) markers were used. The genetic dissimilarity matrix was based on the Jaccard dissimilarity index; clusters were separated using the UPGMA (Unweighted Pair Group Method With Arithmetic Mean) method and cophenetic correlation of 0.8755. This study of the genetic diversity between improved diploids and commercial triploids, based on the genetic dissimilarity matrix, revealed that the most dissimilar diploids were DM23 and DM15 (74%) and DM16 and DM15 (74%). The smallest genetic distances between the improved diploids and commercial triploids were between TCGN25 and DM17 (50%) and TCN26 and DM17 (50%). The genetic distance matrix also revealed important genotypes to be used in crosses in order to maintain good characteristics in commercial triploids when crossed with improved diploids. The results of our study provide better breeding strategies for one of the largest banana-breeding programs worldwide focused on the development of banana varieties resistant to main biotic and abiotic factors.

Improving seedling recruitment and dryland restoration using a targeted fungicide seed coating

The success of seeding projects in dryland systems is sporadic, with failure primarily driven by low seedling emergence and survival. This sporadic nature is influenced by a litany of biotic and abiotic factors that act in synergy to reduce recruitment success. These factors include erratic seasonal weather patterns, competition, predation, plant material selection, and restoration strategies. While some events are unpredictable and uncontrollable, others may be mitigated through thoughtful deliberation. Pathogenesis from soil‐ and seed‐borne fungi is one form of predation that can decrease restoration success. Fungicide seed coatings are technologies used in the agriculture industry to mitigate fungal pathogens, yet these technologies are novel to wildland seeding. We evaluated the ability of a fungicide seed coating to improve bluebunch wheatgrass (Pseudoroegneria spicata) recruitment across a broad range of sites and determined how soil and climate affected seed treatments across six sites over 650 linear kilometers of sagebrush‐steppe habitat in the Great Basin, United States. Treatment effects varied by site; however, on average, the fungicide treatment increased germination by 16%, emergence by 42%, and juvenile plant establishment by 60%. Fungicide seed treatments had a greater effect on seedling emergence in soils with lower pH, reduced wet‐thermal accumulation during the winter, lower bulk density, and higher organic matter content. Most notably, the fungicide seed treatment resulted in higher plant establishment when emerged seedlings were exposed to longer periods of available soil moisture. Fungicide seed treatments can improve the establishment of native bunchgrasses, when soil and climate regimes are considered.

Influence of Foliar Application of Nanoparticles on Low Temperature Resistance of Rice Seedlings

Chilling stress, a common abiotic factor, adversely affects the growth and biomass of rice seedlings during the early stages, ultimately reducing the yield. Effective strategies to mitigate these negative impacts are essential for improving rice productivity. The application of nanotechnology in agriculture, particularly nanoparticles (NPs), has shown a promising effect in alleviating chilling stress in plants. This study evaluates the effects of various nanoparticles, ZnO (0, 50, 100, and 200 mg/L), Fe2O3 (0, 50, 75, and 100 mg/L), TiO2 (0, 50, 75, and 100 mg/L), and CeO2 (0, 50, 75, and 100 mg/L) on the chilling resistance with one control (a water spray) under a normal temperature. Four rice cultivars: LLY-7108 and XZX-6 (Low-temperature-tolerant), and LLY-32 and ZJZ-17 (Low-temperature-susceptible) were tested in this experiment. Rice seedlings were subjected to low temperature conditions (12 h light 14 °C/12 h dark, at 10 °C) for five days, followed by seven days of recovery. The results of this study demonstrate that NPs significantly enhanced seedling height fresh/dry weight and root length compared to untreated controls under chilling stress. NP treatment also reduced the reactive oxygen species (ROS), malondialdehyde (MDA), and proline content, while enhancing superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activities, thereby mitigating oxidative damage. The four rice varieties exhibited clear signs of rapid growth recovery and positive physiological changes due to NPs’ application. Among the tested cultivars, LLY-7108 showed the most substantial recovery and physiological responses, while ZJZ-17 exhibited the least. The findings of this study indicate that the foliar application of ZnO (100 mg/L), Fe2O3 (50 mg/L), TiO2 (50 mg/L), and CeO2 (75 mg/L) NPs effectively mitigates chilling stress in rice seedlings, likely by enhancing the antioxidant enzymatic activity while reducing the oxidative damage. This study highlights the potential of NPs as effective agents in reducing the adverse effects of chilling stress on rice.

Surface Treatment of Oak Wood with Silica Dioxide Nanoparticles and Paraloid B72

Wood is a valuable material with incomparable advantages, though it is susceptible to biotic and abiotic factors action that affect it adversely and shorten its service life. In the current study, the surface modification of oak wood is carried out through brief immersion in a solution of acrylic polymer Paraloid B72, in which silica dioxide nanoparticles in the form of nanopowder were dissolved at different contents (1, 2, 3, and 4% w/v of the solution) aiming at the elimination of wood material hygroscopicity, and the protection and improvement of other properties. Specifically, the modified and unmodified wood specimens were characterized in terms of physical characteristics (density, equilibrium moisture content, colour, and surface roughness), hygroscopic properties (swelling and absorption percentage) and accelerated weathering performance using xenon light and cycles of moisturizing and drying. The results revealed the dimensional stability of the samples and a significant increase in the hydrophobicity of the modified wood, as well as a significant increase in the resistance to the ageing/weathering factors of oak wood, which was proportional to the increase in the presence of nanoparticles in the Paraloid B72 solution. The colour of the treated samples slightly changed towards darker shades, more reddish and yellowish (with L* to decrease, while a* and b* to slightly increase), though the treated wood revealed higher colour stability. The surface roughness parameters (Ra, Rq, and Rz) increased significantly, restricting the wide application of the treated wood in indoor or outdoor applications where surface roughness constitutes a critical factor. The findings of the current work contribute not only to the production of longer-lasting wood and timber structures, but also to the conservation of the existing weathered heritage timber structures.

Composition of biopesticides for crop protection – current state and prospects (review)

Aim. To summarise and analyse available information on research into biopesticide compositions aimed at enhancing their effectiveness and to assess prospects for the development of this field so as to determine the influence of components on the effectiveness of biopesticides for agricultural crop protection.This review article presents the results of studies of components included in the compositions of microorganism‐based biopesticides based on a system analysis. It is noted that the selection of biopesticide components must be carried out in accordance with the requirements for products recommended for use in ecological and organic farming systems. It is indicated that the choice of optimal formulation is associated with the characteristics of the producer strains, their trophic needs and resistance to biotic and abiotic factors and with the characteristics of the biopesticide application technology (seed treatment, application to the soil or treatment of plants during vegetation), as well as the type of equipment used.Knowledge of the basic requirements for biopesticide formulations will help maintain the viability and biological activity of microbial agents during storage of biopesticides, taking into account the sensitivity of producer strains to environmental conditions. Selection of optimal carriers, adhesives, stabilisers, thickeners and synergists, taking into account the technology of application of the biopesticide and the target pathogen, will facilitate the development and appearance on the market of new biopesticides for protecting agricultural crops from diseases.

Assessing Technical Inefficiency in Ecosystem Service Provision from an Input Perspective in the Cross Timbers region, United States.

We modeled the efficiency of ecosystem service provision-specifically timber production, carbon sequestration, and water yield-in the Cross Timbers region of the United States using stochastic frontier analysis from an input perspective. Inputs considered included natural capital and control variables such as temperature, precipitation, soil moisture, and natural disturbances, among others, that impact ecosystem service production. Inefficiency was modeled as a function of factors such as ownership, forest productivity, and natural disturbances. We utilized forest plot-level data obtained from the Forest Inventory and Analysis (FIA) program between 2008 and 2019. Our results indicated that ecosystem service production increased with higher levels of natural capital, higher temperatures, mesic soils, the presence of oaks, and damage caused by abiotic factors. We found evidence of technical inefficiency in the simultaneous provision of ecosystem services. From an input perspective, our findings revealed that, on average, 15.9% more input is used due to technical inefficiency in the Cross Timbers region. Specifically, private ownership and damage caused by abiotic factors resulted in excess input use of 16.4% and 14.3%, respectively, due to technical inefficiency. Managing the encroachment of invasive species like eastern redcedar can enhance ecosystem service production in the region, despite the high implementation costs. Collaboration among multidisciplinary extension professionals can help create comprehensive land management plans for the Cross Timbers, while landowners can also utilize cost-share programs to lower management expenses.

Biotic and abiotic properties mediating sediment microbial diversity and function in a river–lake continuum

A river–lake system plays an important role in water management by providing long-term and frequent water diversions. However, hydrological connectivity in the system can have a profound effect on sediment microbial communities through pH, nutrient concentrations, and benthos invertebrates. Consequently, identifying the key environmental factors and their driving mechanisms is vital for microbial adaptation strategies to extreme environments. In this study, we analyzed the significant difference in sediment bacterial and fungal community structures and diversity indices among Dongting Lake and its tributary rivers, which worked as a typical river-connected lake ecosystem. There were significant differences in biotic and abiotic environments in the sediment habitats of Dongting Lake and its tributary rivers. Random forest analysis revealed that pH and Mollusca were found to be the most important abiotic and biotic variables for predicting both bacterial and fungal community structures, respectively. The beta diversity decomposition analyses showed that the bacterial and fungal community compositional dissimilarities among different sections were dominated by species replacement processes, with more than half of the OTUs in each section being unique. Notably, both biotic and abiotic factors affected the number and the relative abundance of these bacterial and fungal unique OTUs, leading to changes in community composition. Mollusca, pH, TP, NO3-N, and NH4-N were negatively related to the relative abundance of Actinobacteria, Acidobacteria, Gemmatimonadetes, Planctomycetes, and Ascomycota, while Annelida and ORP were positively related to the relative abundance of Actinobacteria and Gemmatimonadetes. Additionally, PICRUSt analysis revealed that the functional dissimilarity among lakes and rivers was strengthened in unique species compared to all species in bacterial and fungal communities, and the changes of functional types helped to improve the habitat environment in the main Dongting Lake and promote the process of microbial growth. From our results, the role of macrozoobenthos and physicochemical characteristics in driving the sediment microbial community spatial variations became clear, which contributed to further understanding of the river–lake ecosystem.

Combining Ability and Gene Action for Grain Yield and Attributing Traits in Maize (Zea mays L.) Subjected to Drought Stress

Background: Maize production is subdued by many impediments that cause yield minimization. Among various biotic and abiotic stress factors, one significant cause of yield reduction in maize is drought stress. Methods: A set of 15 inbreds which were crossed with 3 narrow base testers in line × tester mating design, and resulting 45 F1s along with the parent inbreds and 3 commercial checks were then, in RCBD, subjected to drought stressed and well-watered conditions to assess their genetic worth during spring 2021. Result: The ANOVA unraveled significant mean sum of squares due to lines, testers and line × tester in pooled analysis for all the ten traits. The inbred EI-2188-2 followed by EI-2448 and EI-03-3 contained fair per se performance and significant high GCA effects over the environments for grain yield/plant, proline content and cob length whereas the cross EI-2448-1 × EI-2156 was found most promising hybrid with significant and high SCA effects across the environments regarding grain yield/plant, proline content and cob girth. Prevalence of non-additive type of genetic variance in governing most of the traits suggests adoption of heterosis breeding will be rewarding for improving yield and drought tolerance. Heterotic pooling of the highlighted inbreds and utilization of the superlative hybrids in further breeding programmes for drought tolerance is proposed.

Ectomycorrhizal Community of Norway Spruce Stands with Different Degrees of Tree Decline

Dieback and decline of Norway spruce (Picea abies (L.) Karst.) tree stands on Mtn. Kopaonik are caused by a combination of abiotic and biotic factors. Ectomycorrhizal (ECM) fungi have stabilizing effects on forest trees that are under environmental stress. The aim of our study was to analyze the differences between ECM fungal communities, the number of fine roots, and the abundance of exploration types (ETs) in differently declined Norway spruce stands on Mtn. Kopaonik (Serbia). Three sites were selected: one with no tree decline recorded; one with a moderate decline of trees; and one with a massive decline of trees. Different degrees of tree decline in the studied spruce stands did not affect the number of ECM taxa, the diversity indices, or the percentage of vital fine roots. However, the number of old, non-turgescent, and nonmycorrhizal roots was higher in the spruce stands with tree decline. The ECM community composition differed between the studied sites, but the sites with tree decline had more ECM taxa in common. The ECM taxa of a long-distance ET were significantly more abundant in the spruce stands affected by tree decline.

Application of Silicon Iron and Silver Nanoparticles Improve Vegetative Development and Physiological Characteristics of Boysenberry Plants Grown under Salinity Stress In Vitro Cultivation Conditions

Salinity is one of the most important abiotic stress factors that affect plant growth and limit agricultural productivity. In this study, the effects of iron (FeNP), silver (AgNP), and silicon dioxide (SiNP) nanoparticles on the morphological and physiological parameters of in vitro boysenberry plants grown under salinity stress (NaCl) were investigated. According to our study results, higher values were obtained from SiNP application in terms of shoot development parameters; FeNP application was found to be more successful for root development; AgNP application was effective in terms of SPAD, leaf relative water content (LRWC), and relative growth rate (RGR); and FeNP application increased superoxide dismutase (SOD) and catalase (CAT) enzyme activities. Salt stress significantly affected root development, SPAD values, LRWC and RGR, and SOD and CAT enzyme activities. As a result, under salt stress conditions, SiNP, FeNP, and AgNP applications can significantly reduce the negative effects of stress and promote the vegetative development of the plant compared to control conditions.

Temporal dynamics of scent mark composition in field‐experimental lizard populations

Abstract Animal signals are dynamic traits that can undergo considerable spatial and temporal changes and that are influenced by factors such as age, health condition and interactions with both the abiotic and biotic environment. However, much of our understanding of signal changes throughout an individual's lifetime stems from cross‐sectional, often laboratory‐based, studies focused on visual and auditory signals. Longitudinal field investigations of temporal variation in chemical signals, especially in vertebrates, remain rare despite chemical communication being the most ubiquitous form of information exchange in the natural world. To remedy this, we conducted a unique, replicated field experiment to study the temporal signal dynamics in free‐living lizard populations on natural islands. Specifically, we collected scent marks from individually marked lizards across five populations during the spring of two consecutive years and analysed the lipophilic chemical composition of these scent marks. Our findings demonstrate that the overall scent mark composition of individual lizards changed over time, shifting consistently in both direction and magnitude from year to year among individuals and across replicate populations. Similar patterns were observed for the chemical richness and diversity of scent marks. Temporal variation in the relative proportions of three potentially socially relevant signalling compounds in lizard scent marks revealed a more complex pattern: α‐tocopherol remained stable over time, oleic acid decreased and the change in octadecanoic acid proportion was body size‐dependent. Together, our results provide novel insights into how individual vertebrate chemical signals may fluctuate across space and time. We discuss the potential causes of the observed temporal variability and its consequences for chemical signal evolution. Read the free Plain Language Summary for this article on the Journal blog.

Community successional patterns and inter-kingdom interactions during granular biofilm development.

Aerobic granular sludge is a compact and efficient biofilm process used for wastewater treatment which has received much attention and is currently being implemented worldwide. The microbial associations and their ecological implications occurring during granule development, especially those involving inter-kingdom interactions, are poorly understood. In this work, we monitored the prokaryote and eukaryote community composition and structure during the granulation of activated sludge for 343 days in a sequencing batch reactor (SBR) and investigated the influence of abiotic and biotic factors on the granule development. Sludge granulation was accomplished with low-wash-out dynamics at long settling times, allowing for the microbial communities to adapt to the SBR environmental conditions. The sludge granulation and associated changes in microbial community structure could be divided into three stages: floccular, intermediate, and granular. The eukaryotic and prokaryotic communities showed parallel successional dynamics, with three main sub-communities identified for each kingdom, dominating in each stage of sludge granulation. Although inter-kingdom interactions were shown to affect community succession during the whole experiment, during granule development random factors like the availability of settlement sites or drift acquired increasing importance. The prokaryotic community was more affected by deterministic factors, including reactor conditions, while the eukaryotic community was to a larger extent shaped by biotic interactions (including inter-kingdom interactions) and stochasticity.

Negative associations between aboveground and belowground biodiversity were primarily driven by specific microbial groups mediated by abiotic factors

Negative associations between aboveground and belowground biodiversity were primarily driven by specific microbial groups mediated by abiotic factors

Unravelling the microbiome of wild flowering plants: a comparative study of leaves and flowers in alpine ecosystems

BackgroundWhile substantial research has explored rhizosphere and phyllosphere microbiomes, knowledge on flower microbiome, particularly in wild plants remains limited. This study explores into the diversity, abundance, and composition of bacterial and fungal communities on leaves and flowers of wild flowering plants in their natural alpine habitat, considering the influence of environmental factors.MethodsWe investigated 50 wild flowering plants representing 22 families across seven locations in Austria. Sampling sites encompassed varied soil types (carbonate/silicate) and altitudes (450–2760 m). Amplicon sequencing to characterize bacterial and fungal communities and quantitative PCR to assess microbial abundance was applied, and the influence of biotic and abiotic factors assessed.ResultsOur study revealed distinct bacterial and fungal communities on leaves and flowers, with higher diversity and richness on leaves (228 fungal and 91 bacterial ASVs) than on flowers (163 fungal and 55 bacterial ASVs). In addition, Gammaproteobacteria on flowers and Alphaproteobacteria on leaves suggests niche specialization for plant compartments. Location significantly shaped both community composition and fungal diversity on both plant parts. Notably, soil type influenced community composition but not diversity. Altitude was associated with increased fungal species diversity on leaves and flowers. Furthermore, significant effects of plant family identity emerged within a subset of seven families, impacting bacterial and fungal abundance, fungal Shannon diversity, and bacterial species richness, particularly on flowers.ConclusionThis study provides novel insights into the specific microbiome of wild flowering plants, highlighting adaptations to local environments and plant–microbe coevolution. The observed specificity indicates a potential role in plant health and resilience, which is crucial for predicting how microbiomes respond to changing environments, ultimately aiding in the conservation of natural ecosystems facing climate change pressures.

Distinct morphophysiological responses of the native C4 grasses Axonopus siccus and Eragrostis polytricha to shading

Light, an important abiotic factor that shapes plant growth, is explored here in its impact on two native C4 grasses of campo rupestre, an important and unique montane ecoregion in Brazil that occurs across the biomes Cerrado, Atlantic Forest and Caatinga. Axonopus siccus and Eragrostis polytricha seedlings were subjected to two light conditions: (i) artificial shading and (ii) full sun. The evaluations included growth, nutrition, photosynthesis, leaf anatomy, and metabolism. Shading influenced most of the growth parameters of E. polytricha but left A. siccus morphology almost unchanged. The parameters of leaf anatomy, nutrient content, and chlorophyll a fluorescence exhibited consistent patterns between species. In particular, A. siccus showed higher Amax and light compensation point in shaded conditions, while E. polytricha revealed distinctive changes in carbon metabolism (soluble sugars, sucrose, and starch content), explaining its increased shade growth. These findings underscore various light stress responses in these native C4 grasses.

Influence of abiotic factors on the weight and chemical properties of black currant berries

Influence of abiotic factors on the weight and chemical properties of black currant berries

What Do We Know About CapsicumVolatilome?

The Capsicum genus includes several cultivated species that release complex blends of volatile organic compounds (VOCs) associated with their unique aroma. These VOCs are essential info-chemicals in ecological interactions. In this review, we describe how the volatilomic profiling naturally varies based on specific plant organs and genotypes as well as how non-beneficial organisms affect VOCs biosynthesis and accumulation in pepper plants. Also, we show evidence about VOCs variation under the pressure of different abiotic factors such as water stress, soil type and nutrient availability. The contribution of specific metabolic pathways and gene expression related to the biosynthesis of particular VOCs is addressed. We highlighted the utility of VOCs as chemical markers for quality control in the food industry, breeding programs to generate resistant plants and to improve aroma innovation. Herein we present a database containing 2734 VOCs, revealing 113 as the basic core of the volatilome from five Capsicum species.