The microbial community associated with aquatic animals begins to assemble from the embryonic stage and plays a vital role in their growth and survival. However, the microbial community of the swimming crab Portunus trituberculatus during its embryonic period has not yet been studied. In this study, we investigated the embryonic bacterial community (EBC) of this species across the developmental cycle to elucidate its longitudinal dynamics and biotic sources. The results showed that the diversity of the EBC decreased with host development. The composition of the EBC varied across embryonic development, with a high percent of persistent bacteria and the gradual replacement of γ-Proteobacteria (mainly Oceanospirillaceae and Colwelliaceae) by α-Proteobacteria (Rhodobacteraceae and Flavobacteriaceae) as the major signatures of the succession patterns. Moreover, the unique amplicon sequence variants (ASVs) exhibited the highest functional potentials at the cleavage stage, whereas the shared ASVs did so at the later stages. Furthermore, maternal tissue, mainly the ovary and abdominal setae, contributed the most to the EBC, while rearing water contributed minimally. Overall, our results reveal succession patterns and biotic sources of EBC during the developmental cycle, highlighting that the dominance of embryonic bacteria starts from the early stage of embryo and bacterial vertical transmission is of significance during embryonic development. We also suggest the necessity of microbial management from maternal crabs.
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