32-bit Windows Research Articles

Gene-Ontology-based clustering of gene expression data.

The expected correlation between genetic co-regulation and affiliation to a common biological process is not necessarily the case when numerical cluster algorithms are applied to gene expression data. GO-Cluster uses the tree structure of the Gene Ontology database as a framework for numerical clustering, and thus allowing a simple visualization of gene expression data at various levels of the ontology tree. The 32-bit Windows application is freely available at http://www.mpibpc.mpg.de/go-cluster/

LISREL 8.54: A program for structural equation modelling with latent variables

LISREL 8.54 is a computer program originally designed for estimation of a general structural equation model developed by Karl Joreskog in the early 1970s (Joreskog, 1973). Its current version, LISREL 8.54, is an advanced statistical program for multivariate analysis of linear systems with latent or unobserved variables, econometric structural equation systems, and a variety of factor analytic methods and covariance structure models. Recent developments also include powerful procedures for analysis with non-metric variables including latent variable models with ordinal indicators. The core code of the program is written in FORTRAN, but over the last decade its current vendor, Scientific Software International Inc. (SSI), developed an impressive interactive visual interface in C/C CC that made LISREL one of the most user-friendly multivariate analysis packages available. While preserving its raw power and flexibility, this multi-language architecture, however, contributed to instability problems associated with the 8.50/8.51 versions. Several subsequent upgrades have resulted in the 8.54 release that now more closely resembles the power and reliability of the earlier versions of this program. The LISREL 8.54 program (LISWIN32.EXE) is a 32-bit Windows application which interfaces with several modules, the main two of which are LISREL (LISREL85.EXE) and PRELIS (PRELIS25.EXE).1 PRELIS was developed later than LISREL with the main purpose of providing a pre-processor and data transformation front-end to LISREL.

Sequence type analysis and recombinational tests (START).

The 32-bit Windows application START is implemented using Visual Basic and C(++) and performs analyses to aid in the investigation of bacterial population structure using multilocus sequence data. These analyses include data summary, lineage assignment, and tests for recombination and selection. START is available at http://outbreak.ceid.ox.ac.uk/software.htm. keith.jolley@ceid.ox.ac.uk

AsyrotWin: A 32-bit Windows version of Asyrot, A program for the analysis of high resolution singlet-singlet band spectra of asymmetric tops

A new version of the Asyrot program has been written to extend the computational limits to J=999 and K a=450 and to include the octic, M K , and N K centrifugal distortion constants. The number of transitions calculated and fitted is limited only by available computer memory. Two new phases have been added to the program so that the parameters of a single state can be refined by forming combination differences and then fitting them, along with any available microwave lines, to the appropriate Hamiltonian. A new Windows interface has been integrated with the Fortran code to greatly facilitate the editing of the input data. A limited Windows based band contour plotting and comparison feature has been added. Two utility features are also available. The first allows for the easy transfer of observed line frequencies to the corresponding transition quantum labels listed in the input file. The second allows for the summation of several calculated spectra, of different bands or isotopomers, into an overall contour which can be compared to an observed spectrum.

Updating of the user-interface fitting program “CONFIT” to “CONFIT2000”

The 32-bit Windows 95/98 version of a software for the fitting of Mossbauer spectra (CONFIT), based on older procedures introducing into the original optimization method the idea of convolution, was completed with a user-friendly interface allowing to set up the spectrum model and parameter estimates. In comparison with other similar systems the striking advantage of the new “CONFIT2000” consists in a convenient interactive building of the spectrum model by choosing a background type and adding individual components using a simple mouse clicking. The implementation of distribution and/or transmission integral is optional. Undesirable components can be deleted, shape and position of any component can be modified by the drag-and-drop mouse technique. The system of output data was modified as well. Besides the original log-file the new data structures serve for printing of tabular overview and creation of files suitable for graphs. Not least, some utilities were improved or added. Finally some ideas of further possible improvement of the current features are given.

Achieving a hands-free computer interface using voice recognition and speech synthesis [for Windows-based ATE

Software designers at Hill Air Force Base have developed a voice recognition and speech synthesis system (Voice Control) for use with the F-16 Analog Test Station Sustainment (FATSS) project. The Voice Control system is reliable, speaker independent, and has a total added hardware price tag of under $50.00 per station. In contrast to traditional voice recognition systems, operator training is not required. OO-ALC has developed a general-purpose internal interface (Voice Control) to the Speech Recognition and Text-To-Speech engines provided by Microsoft. Voice Control can be accessed by any 32-bit Windows software, which has windows messaging capability. This is available to standard programming languages such as LabWindows CVI, Borland or Microsoft C/C++, Visual Basic, or even commercial packages such as Lotus Notes and Microsoft Word. Through Voice Control, the computer uses both video and voice prompts to request input from the operator. The operator is allowed to enter data and to control the software flow by voice command or from the keyboard or mouse. The Voice Control system allows for dynamic specification of a grammar set, or legal set of commands. The use of a reduced grammar set greatly increases recognition accuracy. The computer voice enables the operator to focus his attention away from the computer screen, which is required for activities such as probing a circuit card and taking readings. When the operator takes readings, the computer, to insure reliable entry, echoes his voice entries. With electronic tuning, speech synthesis allows the operator to hear the resulting reading, enabling him to focus on the circuit card instead of constantly turning his head to see the computer screen. This paper describes the capability and functionality of the Voice Control system.

CotSim—an interactive Acanthaster planci metapopulation model for the central Great Barrier Reef

CotSim is a size-structured metapopulation model of the crown-of-thorns ( Acanthaster planci ) on the central Great Barrier Reef (GBR). The populations of starfish and the coral cover on 269 individual reefs are modelled for up to 200 years. Starfish are represented as larvae, two age classes of juveniles and three size classes of adults. Coral can either be modelled as a single type or as two types each with a characteristic growth rate, equilibrium cover and susceptibility to starfish predation. Reefs are connected using simulated dispersal data for A. planci on the central GBR. These data were generated using a particle tracking program where simulated currents displaced particles representing dispersing larvae after an A. planci spawning episode. The dispersal data represented patterns expected from the 1976/77 to 1989/90 spawning season. The starfish growth model is a density-dependent matrix model. When coral cover is low, survival within classes is low and the transitions into larger classes is impeded. In contrast, at high coral cover the reverse patterns occur. Both the starfish and coral data are filtered through an interpretation model to generate observed patterns. The starfish interpretation model represents the important difficulty in detecting smaller adults. Results from the model using the default parameters correspond with published patterns of starfish/coral dynamics and the overall patterns of starfish outbreaks on the GBR. The model is an interactive event-driven 32-bit Windows application requiring Windows 95 or Windows NT 3.51/4.0. Most parameters are able to be altered by the user with three tabbed dialogue boxes (for the simulation, starfish and coral parameters). Biologically justifiable default parameters are provided for all parameters. Parameters and initial starfish populations are stored in simple coded ASCII files. Simulations are controlled using ‘Run’, ‘Pause/Continue’ and ‘Stop’ operations. Maps of the GBR illustrate the spatial and temporal structure of the metapopulation dynamics including the patterns of dispersal. Once paused, populations on individual reefs can be examined using two types of plots (time series and single time bar charts). Overall patterns can be displayed using latitude versus time plots of observed reef state. Starfish populations and coral cover can be edited, which enables users of the model to become associated with some of the key issues regarding large-scale starfish control programs. Results from the model can be written to ASCII files for additional analysis. The speed of a simulation is able to be controlled and colours for important graphical elements can be altered. CotSim includes indexed online context-sensitive help and a graphical install routine. The program adheres to published guidelines for Windows applications.

Interlibrary Loan Form Java Programming and Direct Request

ABSTRACT Olivet Nazarene University's Interlibrary Loan PRISM Transfer (IPT) program development has progressed through a number of revisions, including (1) a C-programmed CGI script that includes the new OCLC review file patron fields; (2) an all new Java 32-bit Windows application; and (3) a platform-independent Java applet that can be run inside Web browsers. Both of the Java versions will work with OCLC's Direct Request ILL functions using the ISO 10161 protocol. This article explains the reasons for and the advantages of the further IPT/ISO development and the programming issues that had to be digested before a Java version could be completed. ONU continues to provide their IPT/ISO development as freeware to the Internet and library communities.

Design of a very versatile software program for automating analytical methods

The present article proposes the design of a hardware-independent system for automating various analytical methods. System design is based on the division of the software into four layers, defining a communications interface among them. The definition of these layers allows the isolation of the highest, corresponding to the analytical application, from the lowest, the hardware, composed of the various parts of the block diagram. Although this system was initially designed for automating flow techniques (flow-injection analysis, FIA, and sequential-injection analysis, SIA), its conception allows the development of much more general applications, depending on the user's imagination. The system is very open, in the sense that it is not necessary to adapt the program as system possibilities are expanded. Thus, if new instrumentation (modules in the block diagram) is incorporated, one need only develop independently a minimum of software to comply with the previously defined interface. This system has been developed under the 32-bit Windows 95 environment, making the exchange of information with other applications very simple and allowing the various possibilities offered by the program to be executed simultaneously (for example, data acquisition and processing). © 1999 John Wiley & Sons, Inc. Lab Robotics and Automation 11: 131–140, 1999

Design of a very versatile software program for automating analytical methods

The present article proposes the design of a hardware-independent system for automating various analytical methods. System design is based on the division of the software into four layers, defining a communications interface among them. The definition of these layers allows the isolation of the highest, corresponding to the analytical application, from the lowest, the hardware, composed of the various parts of the block diagram. Although this system was initially designed for automating flow techniques (flow-injection analysis, FIA, and sequential-injection analysis, SIA), its conception allows the development of much more general applications, depending on the user's imagination. The system is very open, in the sense that it is not necessary to adapt the program as system possibilities are expanded. Thus, if new instrumentation (modules in the block diagram) is incorporated, one need only develop independently a minimum of software to comply with the previously defined interface. This system has been developed under the 32-bit Windows 95 environment, making the exchange of information with other applications very simple and allowing the various possibilities offered by the program to be executed simultaneously (for example, data acquisition and processing). © 1999 John Wiley & Sons, Inc. Lab Robotics and Automation 11: 131–140, 1999

Visual Basic programs for one, two or three-dimensional geostatistical analysis

Two previously published FORTRAN-77 programs, FGAM and JCBLOK, are rewritten in Visual Basic 5.0 for 32-bit Windows 95/NT and educational applications. Each program is applicable to spatial data representing one, two or three-dimensions. Graphics are added for displaying computed variograms and color density slices of kriging results within the same windows used to launch the programs. Dynamic array allocation is automatically invoked by the programs without the need for a user to intervene, thus enabling efficient memory management independent of data set size. If analyzing one-dimensional strings of data (profiles), fractal dimensions are computed for four-lag increments of the variogram, thus enabling a scale-dependent analysis. Only the raw, spatial data need to be in a separate file because program options are set interactively using mouse click events motivated by the design of the window for each program. Simplified Geo-EAS input format is accommodated for these files, or generic files are accommodated having allowable record lengths up to 100 values per record.

An evaluation of PCs for high energy physics under Windows NT and Linux

The high availability and commodity prices of Intel-based PCs have made them serious contenders to workstations. We address the question whether PCs are appropriate for running real physics codes. We evaluate the performance of Intel-based systems with two popular 32-bit operating systems, Linux and Windows NT. We report on a suite of benchmark tests, both generic and HEP-specific, where we compare the performance of these two systems to each other, and to other popular workstation class machines.

Polemic: a 32-bit windows program for the identification of minerals in thin section

Polemic: a 32-bit windows program for the identification of minerals in thin section

Professional Video under 32-Bit Windows Operating Systems

The personal computer (PC) and 32-bit Windows operating systems are quickly becoming the platform of choice for professional video, film, and multimedia producers. Windows users have long benefited from the time and money savings offered by “open platform” interoperability. Professional media producers need the same opportunity to be able to buy the best interoperable tools, from an assortment of vendors, at a variety of price/performance points to meet their individual requirements. Many leading video hardware, software, and system vendors are committed to delivering video and audio editing, multimedia authoring, plug-in effects, and animation and graphics creation applications that all work together on PCs with varying performance capabilities. The goal is to let users choose all the best tools for their jobs at competitiveprices. — This paper describes a software architecture for professional video applications based on the enhanced AVI file format, the Windows NT file system (NTFS), and ActiveMovie. It also proposes a set of enhancements to ActiveMovie that will ensure that manufacturers are able to deliver interoperable, broadcast-quality production tools on 32-bit Windows PCs.