By means of a plane-wave-based transfer-matrix method, we present an extensive study of propagation loss in two-dimensional (2D) photonic crystal waveguides with limited cladding wall thickness. We examine the dependence of propagation loss on both the propagation direction and the waveguide wall thickness. It is shown that the propagation loss is a function of excitation frequency, wall thickness and waveguide outermost surface morphology. The conclusion that the propagation loss essentially decays exponentially with respect to the cladding wall thickness of a waveguide is valid only to a certain degree. In addition, we find that the propagation loss exhibit very complex behavior with respect to the excitation frequency.
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