The Palearctic species Trechus obtusus Erichson is reported for the first time from eastern North America. Recent collections in Virginia and North Carolina (new state records) indicate the establishment of the species in the Appalachian region. DNA was extracted from six individuals, and the COI barcoding region was sequenced. All but one of the COI barcode haplotypes were identical to those of T. obtusus collected in western North America. No matches were found with available Palearctic sequences. Individuals of T. obtusus were collected from caves and forest leaf litter, both habitats used by native trechine species. Sampled Appalachian populations of T. obtusus appear to be small, with the exception of the population in Mebane Saltpeter Cave (Pulaski County, VA), which is large and included teneral individuals. Currently, there is no evidence that the species is displacing or otherwise negatively affecting native trechines. The species should be monitored carefully going forward, and targeted sampling of synanthropic habitats will be the best method for early detection.

Continental‐ and regional‐scale assessments of gaps in protected area networks typically use relatively coarse range maps for well documented species groups, creating uncertainty about the fate of unexamined biodiversity and providing insufficient guidance for land managers. By building habitat suitability models for a taxonomically diverse group of 2216 imperiled plants and animals, we revealed comprehensive and detailed protection opportunities in the conterminous United States. Summing protection‐weighted range‐size rarity (PWRSR, the product of the percent of modeled habitat outside of protected areas and the inverse of modeled habitat extent) uncovered novel patterns of biodiversity importance. Concentrations of unprotected imperiled species in places such as the northern Sierra Nevada, central and northern Arizona, the Rocky Mountains of Utah and Colorado, southeastern Texas, southwestern Arkansas, and Florida's Lake Wales Ridge have rarely if ever been featured in continental‐ and regional‐scale analyses. Inclusion of diverse taxa (vertebrates, freshwater mussels, crayfishes, bumble bees, butterflies, skippers, and vascular plants) partially drove these new patterns. When analyses were restricted to groups typically included in previous studies (birds, mammals, and amphibians), up to 53% of imperiled species in other groups were left out. The finer resolution of modeled inputs (990 m) also resulted in a more geographically dispersed pattern. For example, 90% of the human population of the conterminous United States lives within 50 km of modeled habitat for one or more species with high PWRSR scores. Over one‐half of the habitat for 818 species occurs within federally lands managed for biodiversity protection; an additional 360 species have over one‐half of their modeled habitat on federal multiple use land. Freshwater animals occur in places with poorer landscape condition but with less exposure to climate change than other groups, suggesting that habitat restoration is an important conservation strategy for these species. The results provide fine‐scale, taxonomically diverse inputs for local and regional priority‐setting and show that although protection efforts are still widely needed on private lands, notable gains can be achieved by increasing protection status on selected federal lands.

Many questions relevant to conservation decision‐making are characterized by extreme uncertainty due to lack of empirical data and complexity of the underlying ecologic processes, leading to a rapid increase in the use of structured protocols to elicit expert knowledge. Published ecologic applications often employ a modified Delphi method, where experts provide judgments anonymously and mathematical aggregation techniques are used to combine judgments. The Sheffield elicitation framework (SHELF) differs in its behavioral approach to synthesizing individual judgments into a fully specified probability distribution for an unknown quantity. We used the SHELF protocol remotely to assess extinction risk of three subterranean aquatic species that are being considered for listing under the U.S. Endangered Species Act. We provided experts an empirical threat assessment for each known locality over a video conference and recorded judgments on the probability of population persistence over four generations with online submission forms and R‐shiny apps available through the SHELF package. Despite large uncertainty for all populations, there were key differences between species’ risk of extirpation based on spatial variation in dominant threats, local land use and management practices, and species’ microhabitat. The resulting probability distributions provided decision makers with a full picture of uncertainty that was consistent with the probabilistic nature of risk assessments. Discussion among experts during SHELF's behavioral aggregation stage clearly documented dominant threats (e.g., development, timber harvest, animal agriculture, and cave visitation) and their interactions with local cave geology and species’ habitat. Our virtual implementation of the SHELF protocol demonstrated the flexibility of the approach for conservation applications operating on budgets and time lines that can limit in‐person meetings of geographically dispersed experts.

ABSTRACT The 24-ha Abrams Creek Wetlands (Winchester City and Frederick County, Virginia) is an array of fen, swamp, and disturbed transitional ecosystems underlain by limestone and dolostone bedrock. Soils of the area are generally characterized by exceptionally high levels of calcium (>10,000 ppm). Floristic data were collected through monthly surveys during the 2012–14 growing seasons and plot sampling in representative locations. We documented 296 vascular plant species during the inventory period; eight species found previously were not relocated. The 304 total species comprised 206 genera in 78 families. Of these, 55 species were graminoids (27 grasses, 21 sedges, 7 rushes). Obligate or facultative wetland species comprised 43% of the list. The 216 native species represented 71% of the total and included 20 listed as rare in Virginia. Plot data revealed that native species represented 72–99% of the total vegetative cover in the communities sampled. Floristic quality of the 12 constituent sites was ...

Effective conservation and management of biodiversity is limited by a lack of critical knowledge on species’ distributions and abundances. This problem is particularly exacerbated for species living in habitats that are exceptionally difficult to access or survey, such as groundwater habitats. Environmental DNA (eDNA) represents a rapid, noninvasive, and potentially cost-effective new tool for detection and monitoring of biodiversity that occur in such habitats. In this study, we investigated the utility of eDNA in detecting the federally endangered Hay’s Spring Amphipod Stygobromus hayi and a co-occurring common congener S. tenuis potomacus from unique groundwater-associated habitats—hypotelminorheic seepage springs—in the Washington, DC metro area. We developed taxon-specific primers and probes for each species to amplify Stygobromus DNA using qPCR. In silico and in vitro validation demonstrated specificity of each designed assay. Assays were then used to screen water samples collected from ten seepage springs. Stygobromus hayi was detected at four seepage springs, including one potential new locality, while S. t. potomacus was detected at four springs, two of which were new localities. This study is the first to our knowledge to successfully employ an eDNA approach to detect rare or threatened invertebrates from subterranean ecosystems. Our study highlights challenges of employing an eDNA approach for the detection and monitoring of invertebrates in groundwater habitats that are difficult to study, including accounting for PCR inhibition and the potential for cryptic genetic diversity.

Abstract Documenting the impacts of white-nose syndrome (WNS) on demographic patterns, such as annual survivorship and recruitment, is important to understanding the extirpation or possible stabilization and recovery of species over time. To document demographic impacts of WNS on Myotis septentrionalis (Northern Long-eared Bat), we mistnetted at sites in western Virginia where Northern Long-eared Bats were captured in summer before (1990–2009) and after (2011–2013) the onset of WNS. Our mean capture rates per hour, adjusted for area of net and sampling duration, declined significantly from 0.102 bats/ m2/h before WNS to 0.005 bats/m2/h (-95.1%) by 2013. We noted a time lag in the rate of decline between published data based on bats captured during the swarming season and our summer mist-netting captures from the same geographic area. Although proportions of pregnant or lactating females did not vary statistically in samples obtained before and after the onset of WNS, the proportion of juvenile bats declin...

Abstract Myotis grisescens (Gray Bat) is a federally endangered species distributed over the mid-South with a summer range that extends across the upper Tennessee River Basin, including southwest Virginia. Given the onset of White-nose Syndrome (WNS) in the Commonwealth in the winter of 2009, we initiated yearly surveys in late summer 2009 to monitor the status of known summer populations. Our objectives were to examine the relative health of these bats using body mass index (BMI), and determine any changes in juvenile recruitment across sites and years. We did not find any marked changes in BMI across years after WNS for Gray Bats. This finding suggests that surviving bats are either not negatively impacted by WNS or have recovered sufficiently by late summer as to not document obvious differences across years. After limiting our analyses of juvenile recruitment to only the individuals that we had definitively aged via backlit photos (2010–2014), we found a non-significant declining trend in juvenile rec...

Knowledge of the diversity and ecological function of the microbial consortia of James River in Virginia, USA, is essential to developing a more complete understanding of the ecology of this model river system. Metagenomic analysis of James River's planktonic microbial community was performed for the first time using an unamplified genomic library and a 16S rDNA amplicon library prepared and sequenced by Ion PGM and MiSeq, respectively. From the 0.46-Gb WGS library (GenBank:SRR1146621; MG-RAST:4532156.3), 4 × 106 reads revealed >3 × 106 genes, 240 families of prokaryotes, and 155 families of eukaryotes. From the 0.68-Gb 16S library (GenBank:SRR2124995; MG-RAST:4631271.3; EMB:2184), 4 × 106 reads revealed 259 families of eubacteria. Results of the WGS and 16S analyses were highly consistent and indicated that more than half of the bacterial sequences were Proteobacteria, predominantly Comamonadaceae. The most numerous genera in this group were Acidovorax (including iron oxidizers, nitrotolulene degraders, and plant pathogens), which accounted for 10 % of assigned bacterial reads. Polaromonas were another 6 % of all bacterial reads, with many assignments to groups capable of degrading polycyclic aromatic hydrocarbons. Albidiferax (iron reducers) and Variovorax (biodegraders of a variety of natural biogenic compounds as well as anthropogenic contaminants such as polycyclic aromatic hydrocarbons and endocrine disruptors) each accounted for an additional 3 % of bacterial reads. Comparison of these data to other publically-available aquatic metagenomes revealed that this stretch of James River is highly similar to the upper Mississippi River, and that these river systems are more similar to aquaculture and sludge ecosystems than they are to lakes or to a pristine section of the upper Amazon River. Taken together, these analyses exposed previously unknown aspects of microbial biodiversity, documented the ecological responses of microbes to urban effects, and revealed the noteworthy presence of 22 human-pathogenic bacterial genera (e.g., Enterobacteriaceae, pathogenic Pseudomonadaceae, and ‘Vibrionales') and 6 pathogenic eukaryotic genera (e.g., Trypanosomatidae and Vahlkampfiidae). This information about pathogen diversity may be used to promote human epidemiological studies, enhance existing water quality monitoring efforts, and increase awareness of the possible health risks associated with recreational use of James River.