Abstract

Nitrogen is one of the most important nutrients for plants and, in natural soils, its availability is often a major limiting factor for plant growth. Here we examine the effect of different forms of nitrogen nutrition and of photorespiration on gene expression in the model legume Lotus japonicus with the aim of identifying regulatory candidate genes co-ordinating primary nitrogen assimilation and photorespiration. The transcriptomic changes produced by the use of different nitrogen sources in leaves of L. japonicus plants combined with the transcriptomic changes produced in the same tissue by different photorespiratory conditions were examined. The results obtained provide novel information on the possible role of plastidic glutamine synthetase in the response to different nitrogen sources and in the C/N balance of L. japonicus plants. The use of gene co-expression networks establishes a clear relationship between photorespiration and primary nitrogen assimilation and identifies possible transcription factors connected to the genes of both routes.

Highlights

  • Nitrogen is one of the most important nutrients for plants, and, in natural soils, its availability is often a major limiting factor for plant growth

  • Previous studies indicated that the expression levels of different key genes for nitrogen metabolism and photorespiration were affected by a defect in the photorespiratory cycle (PérezDelgado et al, 2013, 2015)

  • In the present study, we examined the transcriptomic response of L. japonicus plants to different forms of nitrogen nutrition, as a first step to determine if the regulation of primary nitrogen assimilation and of photorespiration may be interconnected in legumes

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Summary

Introduction

Nitrogen is one of the most important nutrients for plants, and, in natural soils, its availability is often a major limiting factor for plant growth. The use of nitrogen by plants involves several steps, including uptake, assimilation, translocation, and different forms of recycling and remobilization processes, all of them of crucial importance in terms of nitrogen utilization efficiency (Hirel et al, 2007; Masclaux-Daubresse et al, 2010). Primary nitrogen assimilation by plants involves the use of different forms of inorganic nitrogen (NO3− and/or NH4+), depending on nitrogen availability, plant species, and adaptations. The NH4+ generated by the photorespiratory nitrogen cycle can be up to 20 times that resulting from the reduction of NO3− (Canvin, 1990; Guo et al, 2007). The large amounts of NH4+ generated by the photorespiratory cycle are produced

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