Abstract

BackgroundRetroviral Gag proteins are encoded in introns and, because of this localization, they are subject to the default pathways of pre-mRNA splicing. Retroviruses regulate splicing and translation through a variety of intertwined mechanisms, including 5'- post-transcriptional control elements, 3'- constitutive transport elements, and viral protein RNA interactions that couple unspliced and singly spliced mRNAs to transport machinery. Sequences within the gag gene termed inhibitory or instability sequences also appear to affect viral mRNA stability and translation, and the action of these sequences can be countered by silent mutation or the presence of RNA interaction proteins like HIV-1 Rev. Here, we explored the requirements for mouse mammary tumor virus (MMTV) Gag expression using a combination of in vivo and in vitro expression systems.ResultsWe show that MMTV gag alleles are inhibited for translation despite possessing a functional open reading frame (ORF). The block to expression was post-transcriptional and targeted the mRNA but was not a function of mRNA transport or stability. Using bicistronic reporters, we show that inhibition of gag expression imparted a block to both cap-dependent and cap-independent translation onto the mRNA. Direct introduction of in vitro synthesized gag mRNA resulted in translation, implying a nuclear role in inhibition of expression. The inhibition of expression was overcome by intact proviral expression or by flanking gag with splice sites combined with a functional Rem-Rem response element (RmRE) interaction.ConclusionsExpression of MMTV Gag requires nuclear interactions involving the viral Rem protein, its cognate binding target the RmRE, and surprisingly, both a splice donor and acceptor sequence to achieve appropriate signals for translation of the mRNA in the cytoplasm.

Highlights

  • Retroviral Gag proteins are encoded in introns and, because of this localization, they are subject to the default pathways of pre-mRNA splicing

  • We show that transcript abundance, nuclear-cytoplasmic transport, and transcript stability were equivalent among the inhibited Mtv-1 and HBRV alleles as well as Gag-producing SM allele

  • The silently-mutated gag expresses protein from a heterologous promoter, but wild-type Gag expression is undetectable Three gag alleles were cloned into a cytomegalovirus (CMV) immediate-early promoter vector that has a bovine growth hormone polyadenylation signal (Figure 1A)

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Summary

Introduction

Retroviral Gag proteins are encoded in introns and, because of this localization, they are subject to the default pathways of pre-mRNA splicing. Retroviruses regulate splicing and translation through a variety of intertwined mechanisms, including 5’- post-transcriptional control elements, 3’- constitutive transport elements, and viral protein RNA interactions that couple unspliced and singly spliced mRNAs to transport machinery. Eukaryotic mRNAs typically contain intronic sequences that must be removed by ubiquitously acting splicing mechanisms prior to nuclear export. Splicing occurs cotranscriptionally and affects pre-mRNA stability, 5’ and 3’ end formation, nuclear export, cytoplasmic trafficking and stability, as well as translation [1,2]. The primary structural protein Gag is encoded by an intron in the unspliced genomic RNA. Gag translation requires unique mechanisms to overcome the default eukaryotic splicing pathway and transport an intron-containing mRNP to the cytoplasm

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