Transcriptome data-based identification and expression profiling of genes potentially associated with malic acid accumulation in plum (Prunus salicina Lindl.)

Abstract

Chinese plum (Prunus salicina Lindl.) is an important commercially produced stone fruit that accumulates high amounts of organic acids with numerous health benefits. Organic acids are key components to determine the flavor of any fruit. Here, to identify the potential genes involved in organic acids accumulation in plum, the metabolomic and transcriptomic analysis of plum fruits were performed at four developmental stages (i.e., fruitlet, green, veraison, and mature). The results suggest that malic acid was predominant among the eight organic acids analyzed. RNA-Seq analysis revealed a total of 26,547 unigenes, of which 7,584 representing 28.56% differentially expressed genes (DEGs) were identified. In addition, 11 enzyme coding genes, 21 transporter genes and 5 MYB transcription factor genes involved in malic acid accumulation were identified. Our combined transcriptomic and targeted metabolomic analyses provides new comprehensive insights into understanding the genetic control of fruit acidity in plum which will be useful for future breeding.