TNF-\u03b1 synergises with IFN-\u03b3 to induce caspase-8-JAK1/2-STAT1-dependent death of intestinal epithelial cells

Jerzy A Woznicki,Agnieszka Skowyra,Milan Bustamante-Garrido,Syed A Zulquernain,Pedro Aza-Blanc,Silvia Melgar,Ciaran M Lee,Karine Regazzoni,Subhasree Rajaram,Bradford L Mcrae,Fergus Shanahan,Nyree Crawford,Peter Flood,Jane Mccarthy,Ken Nally,Nisha Saini,Simon S Mcdade,Daniel B Longley,Panagiota Stamou

doi:10.1038/s41419-021-04151-3

Abstract

Rewiring of host cytokine networks is a key feature of inflammatory bowel diseases (IBD) such as Crohn’s disease (CD). Th1-type cytokines—IFN-γ and TNF-α—occupy critical nodes within these networks and both are associated with disruption of gut epithelial barrier function. This may be due to their ability to synergistically trigger the death of intestinal epithelial cells (IECs) via largely unknown mechanisms. In this study, through unbiased kinome RNAi and drug repurposing screens we identified JAK1/2 kinases as the principal and nonredundant drivers of the synergistic killing of human IECs by IFN-γ/TNF-α. Sensitivity to IFN-γ/TNF-α-mediated synergistic IEC death was retained in primary patient-derived intestinal organoids. Dependence on JAK1/2 was confirmed using genetic loss-of-function studies and JAK inhibitors (JAKinibs). Despite the presence of biochemical features consistent with canonical TNFR1-mediated apoptosis and necroptosis, IFN-γ/TNF-α-induced IEC death was independent of RIPK1/3, ZBP1, MLKL or caspase activity. Instead, it involved sustained activation of JAK1/2-STAT1 signalling, which required a nonenzymatic scaffold function of caspase-8 (CASP8). Further modelling in gut mucosal biopsies revealed an intercorrelated induction of the lethal CASP8-JAK1/2-STAT1 module during ex vivo stimulation of T cells. Functional studies in CD-derived organoids using inhibitors of apoptosis, necroptosis and JAKinibs confirmed the causative role of JAK1/2-STAT1 in cytokine-induced death of primary IECs. Collectively, we demonstrate that TNF-α synergises with IFN-γ to kill IECs via the CASP8-JAK1/2-STAT1 module independently of canonical TNFR1 and cell death signalling. This non-canonical cell death pathway may underpin immunopathology driven by IFN-γ/TNF-α in diverse autoinflammatory diseases such as IBD, and its inhibition may contribute to the therapeutic efficacy of anti-TNFs and JAKinibs.

Highlights

Excessive death of intestinal epithelial cells (IECs) is associated with severe gut immunopathology in inflammatory bowel diseases (IBD), including Crohn’s disease (CD) [1]
IFN-γ and TNF-α kill IECs via non-canonical TNF receptor 1 (TNFR1)-mediated signalling Considering the central role of RIPK1/3 during TNFR1-mediated canonical cell death signalling [41], we found it surprising neither kinase was identified as a protective hit in the kinome RNAi screen
In line with no protective effect of apoptosis/necroptosis inhibitors, we found that depletion of RIPK1, RIPK3 or ZBP1 with siRNA failed to rescue HT-29 cells from IFN-γ/TNF-α (Fig. S3A)

Summary

Introduction

Excessive death of intestinal epithelial cells (IECs) is associated with severe gut immunopathology in inflammatory bowel diseases (IBD), including Crohn’s disease (CD) [1]. While most cell types are resistant to its direct cytotoxic effects, TNF-α can trigger contextdependent cell death downstream of TNF receptor 1 (TNFR1) in cells sensitised through largely non-physiological perturbations [4]. Under these conditions, TNF-α can induce apoptosis via TRADDdependent complex IIa or RIPK1/FADD-dependent complex IIb (ripoptosome), or it can promote RIPK3/MLKL-dependent necroptosis [5]. In humans, increased IEC apoptosis was observed in the inflamed gut of patients with CD [14], and this aberrant response was normalised by anti-TNFs [15]

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