Abstract
For a healthy oral cavity, maintaining a healthy microbiome is essential. However, data on healthy microbiomes are not sufficient. To determine the nature of the core microbiome, the oral-microbiome structure was analyzed using pyrosequencing data. Saliva samples were obtained from healthy 90-year-old participants who attended the 20-year follow-up Niigata cohort study. A total of 85 people participated in the health checkups. The study population consisted of 40 male and 45 female participants. Stimulated saliva samples were obtained by chewing paraffin wax for 5 min. The V3–V4 hypervariable regions of the 16S ribosomal RNA (rRNA) gene were amplified by PCR. Pyrosequencing was performed using MiSeq. Operational taxonomic units (OTUs) were assigned on the basis of a 97% identity search in the EzTaxon-e database. Using the threshold of 100% detection on the species level, 13 species were detected: Streptococcus sinensis, Streptococcus pneumoniae, Streptococcus salivarius, KV831974_s, Streptococcus parasanguinis, Veillonella dispar, Granulicatella adiacens, Streptococcus_uc, Streptococcus peroris, KE952139_s, Veillonella parvula, Atopobium parvulum, and AFQU_vs. These species represent potential candidates for the core make-up of the human microbiome.
Highlights
Microbiota inhabiting the human body have long been recognized as critical for a variety of human diseases and in maintaining human health [1,2,3,4,5]
Several studies showed that there is a relationship between the human oral microbiome and certain systemic diseases, such as pancreatic cancer [8], Type 2 diabetes [9], pediatric Crohn’s disease [10], heart disease [11], and low-weight preterm birth [12]
The aim of this study was to investigate the oral microbiome of a community of healthy people at the age of 90 in an attempt to identify their core oral microbiome
Summary
Microbiota inhabiting the human body have long been recognized as critical for a variety of human diseases and in maintaining human health [1,2,3,4,5]. The microbiome of humans has been extensively studied using accurate and efficient approaches involving high-throughput sequencing technologies and bioinformatics [6]. Among several microbiomes in the human body, the oral microbiome has been extensively studied. Specific bacterial taxa are responsible for oral infectious diseases, such as dental caries and periodontal diseases. Microbial diversity increases in parallel with the progression of periodontitis [7]. Several studies showed that there is a relationship between the human oral microbiome and certain systemic diseases, such as pancreatic cancer [8], Type 2 diabetes [9], pediatric Crohn’s disease [10], heart disease [11], and low-weight preterm birth [12]. Certain oral bacterial species may contribute to
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