Abstract

Eukaryotic gene expression starts off from a largely obstructive chromatin substrate that has to be rendered accessible by regulated mechanisms of chromatin remodeling. The yeast PHO5 promoter is a well known example for the contribution of positioned nucleosomes to gene repression and for extensive chromatin remodeling in the course of gene induction. Recently, the mechanism of this remodeling process was shown to lead to the disassembly of promoter nucleosomes and the eviction of the constituent histones in trans. This finding called for a histone acceptor in trans and thus made histone chaperones likely to be involved in this process. In this study we have shown that the histone chaperone Asf1 increases the rate of histone eviction at the PHO5 promoter. In the absence of Asf1 histone eviction is delayed, but the final outcome of the chromatin transition is not affected. The same is true for the coregulated PHO8 promoter where induction also leads to histone eviction and where the rate of histone loss is reduced in asf1 strains as well, although less severely. Importantly, the final extent of chromatin remodeling is not affected. We have also presented evidence that Asf1 and the SWI/SNF chromatin remodeling complex work in distinct parallel but functionally overlapping pathways, i.e. they both contribute toward the same outcome without being mutually strictly dependent.

Highlights

  • The DNA of eukaryotic cells is compacted in the nucleus into a complex structure called chromatin

  • In this study we have shown that the histone chaperone Asf1 increases the rate of histone eviction at the PHO5 promoter

  • The Kinetics of PHO5 Induction Are Delayed in the Absence of the Histone Chaperone Asf1—In the course of our mechanistic studies of chromatin opening at the PHO5 promoter, we examined a possible role of histone chaperones in the process that leads to histone eviction in trans [10, 11]

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Summary

Introduction

The DNA of eukaryotic cells is compacted in the nucleus into a complex structure called chromatin. DNA that is wound around a histone octamer in a canonical nucleosome is much less accessible for most DNA-interacting factors than DNA in the linker regions between nucleosomes It is widely accepted that nucleosomes serve a structural role for the compaction of eukaryotic DNA and that the obstructive nature of the nucleosomal histone-DNA interactions is a means to regulate the expression of genetic information [2,3,4]. To understand the process of regulation through chromatin structure it is crucial to study the molecular mechanisms that lead to the inducible generation of hypersensitive sites To this end, the PHO5 promoter in yeast became a classical model system [5]. The rate of chromatin remodeling was delayed, but, importantly, the final extent of chromatin remodeling and gene expression was not compromised

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