Abstract
β- and γ-herpesviruses include the oncogenic human viruses Kaposi's sarcoma-associated virus (KSHV) and Epstein-Barr virus (EBV), and human cytomegalovirus (HCMV), which is a significant cause of congenital disease. Near the end of their replication cycle, these viruses transcribe their late genes in a manner distinct from host transcription. Late gene transcription requires six virally encoded proteins, one of which is a functional mimic of host TATA-box-binding protein (TBP) that is also involved in recruitment of RNA polymerase II (Pol II) via unknown mechanisms. Here, we applied biochemical protein interaction studies together with electron microscopy-based imaging of a reconstituted human preinitiation complex to define the mechanism underlying Pol II recruitment. These data revealed that the herpesviral TBP, encoded by ORF24 in KSHV, makes a direct protein-protein contact with the C-terminal domain of host RNA polymerase II (Pol II), which is a unique feature that functionally distinguishes viral from cellular TBP. The interaction is mediated by the N-terminal domain (NTD) of ORF24 through a conserved motif that is shared in its β- and γ-herpesvirus homologs. Thus, these herpesviruses employ an unprecedented strategy in eukaryotic transcription, wherein promoter recognition and polymerase recruitment are facilitated by a single transcriptional activator with functionally distinct domains.
Highlights
Eukaryotic transcription begins with the formation of a pre-initiation complex (PIC) at the core promoter, starting with binding of TFIID and deployment of TATA-box-binding protein (TBP) onto the TATA box or pseudo-TATA box region upstream of the transcription start site (TSS)
We previously revealed that Kaposi’s sarcoma-associated herpesvirus (KSHV) ORF24 co-immunoprecipitates with polymerase II (Pol II) in cells in a manner dependent on three conserved leucine residues (L73-75; the RLLLG motif) in the Nterminus of ORF24 [19]. β- and γ-herpesviral homologs of ORF24 from murine gammaherpesvirus 68 (MHV68; mu24), Epstein-Barr virus (EBV; BcRF1), and human cytomegalovirus (HCMV; UL87) have been reported to interact with Pol II in cells [12, 19, 26]
While this interaction requires no other viral proteins, how it is orchestrated remains a central open question. It is unknown whether Pol II binding occurs through an ORF24 domain separable from the region required for binding the ORF34 viral transcriptional activators (vTAs) or the region required for binding to promoter DNA
Summary
Eukaryotic transcription begins with the formation of a pre-initiation complex (PIC) at the core promoter, starting with binding of TFIID and deployment of TATA-box-binding protein (TBP) onto the TATA box or pseudo-TATA box region upstream of the transcription start site (TSS). This is followed by recruitment of the other general transcription factors (GTFs), which recruit and position the 12-subunit RNA polymerase II (Pol II) at the core promoter [1]. The CTD is a regulatory hub responsible for coordinating signals throughout the different stages of transcription and RNA processing [2]. Pol II with a hypophosphorylated CTD is recruited into the PIC [4], and phosphorylation signals release from the PIC into an elongating complex
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