Abstract

The partitioning of space with Hirshfeld surfaces enables the analysis of fingerprint molecular interactions in crystalline environments. This study uses the decomposition of the crystal contact surface between pairs of interacting chemical species to derive an enrichment ratio. This quantity enables the analysis of the propensity of chemical species to form intermolecular interactions with themselves and other species. The enrichment ratio is obtained by comparing the actual contacts in the crystal with those computed as if all types of contacts had the same probability to form. The enrichments and contact tendencies were analyzed in several families of compounds, based on chemical composition and aromatic character. As expected, the polar contacts of the type H⋯N, H⋯O and H⋯S, which are generally hydrogen bonds, show enrichment values larger than unity. O⋯O and N⋯N contacts are impoverished while H⋯H interactions display enrichment ratios which are generally close to unity or slightly lower. In aromatic compounds, C⋯C contacts can display large enrichment ratios due to extensive π⋯π stacking in the crystal packings of heterocyclic compounds. C⋯C contacts are, however, less enriched in pure (C,H) hydrocarbons as π⋯π stacking is not so favourable from the electrostatic point of view compared with heterocycles. C⋯H contacts are favoured in (C,H) aromatics, but these interactions occur less in compounds containing O, N or S as some H atoms are then involved in hydrogen bonds. The study also highlights the fact that hydrogen is a prefered interaction partner for fluorine.

Highlights

  • The involvement of functional groups in crystal packing contacts is widely investigated in the literature in order to better understand the principles of crystal formation

  • In this manner different interaction types such as hydrogen bonding, van der Waals contacts, C—HÁ Á Á and Á Á Á stacking can be identified in the fingerprint plots

  • The contacts between chemical species were analyzed in several sets of crystal structures containing at most three different chemical types

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Summary

Introduction

The involvement of functional groups in crystal packing contacts is widely investigated in the literature in order to better understand the principles of crystal formation. The program notably enables fingerprinting of intermolecular interactions by pairs of chemical species In this manner different interaction types such as hydrogen bonding, van der Waals contacts, C—HÁ Á Á and Á Á Á stacking can be identified in the fingerprint plots. The dnorm quantity, which was introduced by McKinnon et al (2007), is negative where contacts are shorter than the van der Waals separation, and doi:10.1107/S2052252514003327 119 research papers positive for longer contacts. This quantity plotted on a Hirshfeld surface provides a very informative tool to analyze crystal packings

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