Abstract

The evolution of sex chromosomes is usually considered to be driven by sexually antagonistic selection in the diploid phase. However, selection during the haploid gametic phase of the lifecycle has recently received theoretical attention as possibly playing a central role in sex chromosome evolution, especially in plants where gene expression in the haploid phase is extensive. In particular, male‐specific haploid selection might favor the linkage of pollen beneficial alleles to male sex determining regions on incipient Y chromosomes. This linkage might then allow such alleles to further specialize for the haploid phase. Purifying haploid selection is also expected to slow the degeneration of Y‐linked genes expressed in the haploid phase. Here, we examine the evolution of gene expression in flower buds and pollen of two species of Rumex to test for signatures of haploid selection acting during plant sex chromosome evolution. We find that genes with high ancestral pollen expression bias occur more often on sex chromosomes than autosomes and that genes on the Y chromosome are more likely to become enriched for pollen expression bias. We also find that genes with low expression in pollen are more likely to be lost from the Y chromosome. Our results suggest that sex‐specific haploid selection during the gametophytic stage of the lifecycle may be a major contributor to several features of plant sex chromosome evolution.

Highlights

  • Selection in the haploid phase of the life cycle is considered to be a strong force allowing for the efficient purging and fixation of recessive alleles

  • The values we obtained for pollen were significantly lower than in flower bud tissue, where 81.7 and 87.3% of predicted leaf transcripts were actively transcribed in R. hastatulus and R. rothschildianus, respectively

  • We report evidence that differential retention of pollen-expressed genes during degeneration, pollenization upon divergence, and/or adaptive linkage of pollen-expressed genes jointly contribute to the enrichment of Y chromosomes for pollen expressed genes in Rumex

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Summary

Introduction

Selection in the haploid phase of the life cycle is considered to be a strong force allowing for the efficient purging and fixation of recessive alleles. Purifying haploid selection may slow down the degeneration of nonrecombining chromosomes Our results support previous findings in Silene that haploid selection contributes to the retention of genes on the Y chromosome, and provides novel empirical evidence for adaptive specialization of Ylinked genes for the haploid phase of the plant life cycle. In the hermaphroditic plant Arabidopsis thaliana 60–70% of all genes are expressed in pollen (Honys and Twell 2004; Borges et al 2008) Such haploid expression exposes genes to a unique selective regime that includes more efficient removal of deleterious mutations from a population as recessive deleterious phenotypic effects are expressed (Gerstein and Otto 2009). Pollen competition is generally considered to be a common feature of angiosperms, further increasing selective pressures imposed on plant genomes in the haploid phase (Moore and Pannell 2011)

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