Abstract
BackgroundHow cells decipher the duration of an external signal into different transcriptional outcomes is poorly understood. The hormone gastrin can promote a variety of cellular responses including proliferation, differentiation, migration and anti-apoptosis. While gastrin in normal concentrations has important physiological functions in the gastrointestine, prolonged high levels of gastrin (hypergastrinemia) is related to pathophysiological processes.ResultsWe have used genome-wide microarray time series analysis and molecular studies to identify genes that are affected by the duration of gastrin treatment in adenocarcinoma cells. Among 403 genes differentially regulated in transiently (gastrin removed after 1 h) versus sustained (gastrin present for 14 h) treated cells, 259 genes upregulated by sustained gastrin treatment compared to untreated controls were expressed at lower levels in the transient mode. The difference was subtle for early genes like Junb and c-Fos, but substantial for delayed and late genes. Inhibition of protein synthesis by cycloheximide was used to distinguish between primary and secondary gastrin regulated genes. The majority of gastrin upregulated genes lower expressed in transiently treated cells were primary genes induced independently of de novo protein synthesis. This indicates that the duration effect of gastrin treatment is mainly mediated via post-translational signalling events, while a smaller fraction of the differentially expressed genes are regulated downstream of primary transcriptional events. Indeed, sustained gastrin treatment specifically induced prolonged ERK1/2 activation and elevated levels of the AP-1 subunit protein JUNB. Enrichment analyses of the differentially expressed genes suggested that endoplasmic reticulum (ER) stress and survival is affected by the duration of gastrin treatment. Sustained treatment exerted an anti-apoptotic effect on serum starvation-induced apoptosis via a PKC-dependent mechanism. In accordance with this, only sustained treatment induced anti-apoptotic genes like Clu, Selm and Mcl1, while the pro-apoptotic gene Casp2 was more highly expressed in transiently treated cells. Knockdown studies showed that JUNB is involved in sustained gastrin induced expression of the UPR/ER stress related genes Atf4, Herpud1 and Chac1.ConclusionThe duration of gastrin treatment affects both intracellular signalling mechanisms and gene expression, and ERK1/2 and AP-1 seem to play a role in converting different durations of gastrin treatment into distinct cellular responses.
Highlights
How cells decipher the duration of an external signal into different transcriptional outcomes is poorly understood
Identification of genes that are differentially regulated by transient versus sustained gastrin signalling To investigate the mRNA transcriptome in response to varying duration of gastrin treatment, we performed genome-wide microarray time series experiments in the adenocarcinoma cell line AR42J
These observations comply with our results from an earlier microarray 24 h time series study which showed that the regulation of several hundred genes was affected by gastrin signalling duration and that globally, gene expression levels returned earlier to baseline in cells subjected to transient (2 h) treatment compared to sustained treatment (Additional file 2: Accession number: E-MTAB123)
Summary
How cells decipher the duration of an external signal into different transcriptional outcomes is poorly understood. The cellular response to one particular ligand is usually specific to a given cell type [1], some studies have shown that the duration [2,3,4,5] or concentration [4,6] of the external stimuli may influence the transcriptional program and cell fate decision. Gene expression profiling in a pancreatic beta cell model treated with glucose and cAMP has shown that the majority of genes regulated in sustained treated cells were not regulated by transient (1 h) treatment, indicating that beta cells can produce drastically different transcriptional outputs in response to different durations of metabolic stimuli [2]. In which way the duration of external signals affects molecular and biological responses has only been explored in a few cell systems and the mechanisms are still not well characterized
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