Spectroscopic Studies of a Bacterial Cyclic Nucleotide-Gated Ion Channel

Abstract

Cyclic nucleotide-gated (CNG) channels are members of the Kv channel superfamily and play a crucial role in the phototransduction and olfactory transduction pathways, where they generate the initial electrical signal following sensory transduction. CNG channels are directly regulated by cyclic nucleotides, which bind to a C-terminal cyclic nucleotide-binding domain (CNBD) connected to the pore by an intervening C-linker domain. Mutagenesis and crosslinking experiments indicate that the C-terminal region (C-linker/CNBD) undergoes a conformation change to transduce cyclic nucleotide binding into channel activation, though the exact nature of this change remains unclear. To address this question, we first sought a stable and well-behaved bacterial CNG channel suitable for spectroscopic studies. We used fluorescence-detection size-exclusion chromatography to screen a library of bacterial orthologs, which identified several candidates that could be expressed and purified at high levels. Flux studies of liposome-reconstituted channels demonstrated that these orthologs are fully functional and are activated by cyclic nucleotides. We then mutated the endogenous Cys residues in these channels before introducing Cys residues throughout the C-terminal region for spin label and fluorophore attachment. Inter-subunit double electron-electron resonance (DEER) measurements will be used to detect large-scale structural changes in these channels induced by cyclic nucleotide binding, while transition metal FRET (tmFRET) will be used to characterize subtle, localized changes to channel structure following activation. Our ultimate goal is to use these two spectroscopic techniques to characterize small- and large-scale rearrangements induced by cyclic nucleotide binding, allowing us to generate a complete structural model for CNG channel activation.