Spatial and temporal patterns of amphibian species richness on Tianping Mountain, Hunan Province, China.

Evolutionary processes underlying spatial patterns in species richness remain largely unexplored, and correlative studies lack the theoretical basis to explain these patterns in evolutionary terms. In this study, we develop a spatially explicit simulation model to evaluate, under a pattern-oriented modeling approach, whether evolutionary niche dynamics (the balance between niche conservatism and niche evolution processes) can provide a parsimonious explanation for patterns in species richness. We model the size, shape, and location of species' geographical ranges in a multivariate heterogeneous environmental landscape by simulating an evolutionary process in which environmental fluctuations create geographic range fragmentation, which, in turn, regulates speciation and extinction. We applied the model to the South American domain, adjusting parameters to maximize the correspondence between observed and predicted patterns in richness of about 3,000 bird species. Predicted spatial patterns, which closely resemble observed ones (r2=0.795), proved sensitive to niche dynamics processes. Our simulations allow evaluation of the roles of both evolutionary and ecological processes in explaining spatial patterns in species richness, revealing the enormous potential of the link between ecology and historical biogeography under integrated theoretical and methodological frameworks.

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 244:285-297 (2002) - doi:10.3354/meps244285 Species richness of marine soft sediments John S. Gray* Department of Biology, University of Oslo, Pb 1064, Blindern 0316, Oslo, Norway *Email: j.s.gray@bio.uio.no ABSTRACT: Marine soft sediments comprise one of the largest and oldest habitats in the world, yet remarkably little is known about patterns of species richness. Here I present a short review of patterns of species richness and possible factors that influence such patterns. Species richness in general is remarkably high in both shallow coastal areas and the deep sea. However, there are clear differences‹the deep-sea has higher number of species for a given number of individuals than the coast. This can be explained by the larger amounts of primary production that reach coastal compared with deep-sea sediments, leading to higher numbers of individuals per unit area. Species density (the number of species per unit area) is also higher in the deep-sea than in coastal areas, but it is not obvious why this is so. Most studies of the broad patterns of species richness have used samples taken at small scales only. The problem with such analyses is that unless a large number of samples are taken, the true underlying pattern (or lack of it) may be wrongly interpreted. Recent studies have analysed species richness at larger scales. In general there seems to be a cline of increasing species richness from the Arctic to the tropics, but this is not the case in the southern hemisphere, where Antarctic species richness is high. However, it is not known whether high species richness in the Antarctic occurs at all spatial scales. To what extent these patterns are determined by evolutionary factors remains to be determined by the application of molecular methods. The available evidence suggests that environmental factors such as productivity, temperature, and sediment grain-size diversity play dominant roles in determining patterns of regional-scale species richness and patterns in species turnover, and it is probably the regional scale that primarily determines local species richness. KEY WORDS: Diversity · Deep sea · Coasts · Patterns · Scales Full text in pdf format PreviousNextExport citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 244. Online publication date: November 29, 2002 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2002 Inter-Research.

Aim To test for control of vascular plant species richness in the riparian corridor by exploring three contrasting (although not mutually exclusive) hypotheses: (1) longitudinal patterns in riparian plant species richness are governed by local, river‐related processes independent of the regional species richness, (2) riparian plant species richness is controlled by dispersal along the river (longitudinal control), and (3) the variation in riparian plant species richness mirrors variation in regional richness (lateral control).Location The riparian zones of the free‐flowing Vindel River and its surrounding river valley, northern Sweden.Methods We used data from three surveys, undertaken at 10‐year intervals, of riparian reaches (200‐m stretches of riverbank) spanning the entire river. In addition, we surveyed species richness of vascular plants in the uplands adjacent to the river in 3.75‐km2 large plots along the same regional gradient. We explored the relationship between riparian and upland flora, and various environmental variables. We also evaluated temporal variation in downstream patterns of the riparian flora.Results Our results suggest that local species richness in boreal rivers is mainly a result of local, river‐related processes and dispersal along the corridor. The strongest correlation between species richness and the environment was a negative one between species number and soil pH, but pH varied within a narrow range. We did not find evidence for a correlation between species richness on regional and local scales. We found that the local patterns of species richness for naturally occurring vascular plants were temporally variable, probably in response to large‐scale disturbance caused by extreme floods. Most previous studies have found a unimodal pattern of species richness with peaks in the middle reaches of a river. In contrast, on two of three occasions corresponding to major flooding events, we found that the distribution of species richness of naturally occurring vascular plants resembled that of regional diversity: a monotonic decrease from headwater to coast. We also found high floristic similarity between the riparian corridor and the surrounding landscape.Main conclusions These results suggest that local processes control patterns of riparian species richness, but that species composition is also highly dependent on the regional species pool. We argue that inter‐annual variation in flood disturbance is probably the most important factor producing temporal variability of longitudinal species richness patterns.

Generalized linear models were used to test the effect of fish, using ponds with and without fish and habitat features as covariates, on richness and abundance of amphibian species. Five fish species and six amphibian species were recorded in 60 permanent ponds located in central Italy. The choice of covariates (macrophyte cover and pond surface area) was made after studying the correlations. The richness of amphibian species was not significantly affected by fish presence or macrophyte cover, in line with previous studies, since almost all the fish species were non-predatory. However, abundance of urodeles (newts) was negatively affected by fish and positively affected by macrophyte cover. Although fish may strongly influence the abundance and composition of amphibian communities, the results indicate that the cover of aquatic macrophytes may increase the available habitat for amphibians and therefore their abundance. Anuran species preferred ponds where fish were present, since both groups preferred larger ponds. Concordance between fish and amphibian species composition was not found by the Mantel and Partial Mantel tests. This indicates that the fish assemblages do not predict which amphibian species occur in the pond.

Patterns and drivers of herbivore diversity and invertebrate herbivory along elevational and land use gradients at Mt. Kilimanjaro, Tanzania

With the impending threat of climate change, greater understanding of patterns of species distributions and richness and the environmental factors driving them are required for effective conservation efforts. Species distribution models enable us to not only estimate geographic extents of species and subsequent patterns of species richness, but also generate hypotheses regarding environmental factors determining these spatial patterns. Projected changes in climate can then be used to predict future patterns of species distributions and richness. We created distribution models for most of the flightless ground beetles (Carabidae) within the Wet Tropics World Heritage Area of Australia, a major component of regionally endemic invertebrates. Forty-three species were modelled and the environmental correlates of these distributions and resultant patterns of species richness were examined. Flightless ground beetles generally inhabit upland areas characterised by stable, cool and wet environmental conditions. These distribution and richness patterns are best explained using the time-stability hypothesis as this group’s primary habitat, upland rainforest, is considered to be the most stable regional habitat. Projected changes in distributions indicate that as upward shifts in distributions occur, species currently confined to lower and drier mountain ranges will be more vulnerable to climate change impacts than those restricted to the highest and wettest mountains. Distribution models under projected future climate change suggest that there will be reductions in range size, population size and species richness under all emission scenarios. Eighty-eight per cent of species modelled are predicted to decline in population size by over 80%, for the most severe emission scenario by the year 2080. These results suggest that flightless ground beetles are among the most vulnerable taxa to climate change impacts so far investigated in the Wet Tropics World Heritage Area. These findings have dramatic implications for all other flightless insect taxa and the future biodiversity of this region.

Evolutionary processes underlying spatial patterns in species richness remain largely unexplored, and correlative studies lack the theoretical basis to explain these patterns in evolutionary terms. In this study, we develop a spatially explicit simulation model to evaluate, under a pattern‐oriented modeling approach, whether evolutionary niche dynamics (the balance between niche conservatism and niche evolution processes) can provide a parsimonious explanation for patterns in species richness. We model the size, shape, and location of species’ geographical ranges in a multivariate heterogeneous environmental landscape by simulating an evolutionary process in which environmental fluctuations create geographic range fragmentation, which, in turn, regulates speciation and extinction. We applied the model to the South American domain, adjusting parameters to maximize the correspondence between observed and predicted patterns in richness of about 3,000 bird species. Predicted spatial patterns, which closely resemble observed ones ($$r^{2}=0.795$$), proved sensitive to niche dynamics processes. Our simulations allow evaluation of the roles of both evolutionary and ecological processes in explaining spatial patterns in species richness, revealing the enormous potential of the link between ecology and historical biogeography under integrated theoretical and methodological frameworks.

Geographic differences between functional groups in patterns of bird species richness in North America


 
 
 
 Habitat loss, degradation, and fragmentation due to urbanization are implicated in amphibian declines worldwide. Conservation efforts require information on resident species and their habitat interactions, but amphibian ecology is largely unstudied in urban centers of the Southern High Plains. Here, we gathered baseline data on amphibian presence, species richness, and habitat preferences at site-specific and landscape scales during a severe drought year in the city of Lubbock, in northwestern Texas. Ephemeral playa wetlands are characteristic of this landscape. During urbanization, these have been extensively modifiied for stormwater drainage, agriculture, and construction of roads, buildings and neighborhoods. A semi-arid climate with frequent droughts, together with urbanization, could have an adverse effect on resident amphibians. In 2011, we sampled 23 urban lakes for amphibian presence, using a combination of audio, visual, and larval surveys. We detected five amphibian species at seven lakes; Texas Toads (Anaxyrus speciosus) and Spotted Chorus Frogs (Pseudacris clarkii) were the most frequently encountered species. We found significant negative effects of nearby road density on amphibian species presence and richness. We also detected significant negative effects of basic pH on amphibian species richness. These data can be used for prioritizing lakes for amphibian conservation strategies, to monitor ecosystem function in urban wetlands, and to guide future development and restoration efforts.
 
 
 

Knowledge on the spatial distribution of plant species richness and its associated factors is crucial for addressing several ecological problems. Climate factors have long been used to explain species richness patterns across space and time. In this study, we investigated how water and energy variables shape species richness patterns on the alpine Tibetan plateau. An empirical study involving 800 plots of size 1 m2 on 80 different sites was conducted across two transects, covering the arid and semi‐arid alpine region of the western part of the Tibetan plateau to explore plant species composition and richness in relation to climatic factors at a regional scale. We performed detrended correspondence analysis and generalized linear models to explore the effect of energy and water variables on species composition and species richness, respectively. We used a generalized linear mixed model to investigate the interactive effect of energy variables and water variables on species richness. We found that both energy variables and water variables significantly influenced species richness and composition on the alpine Tibetan plateau and supported the water–energy dynamics (WED) hypothesis. Specificall, plant species richness increased with greater liquid water availability. However, it exhibited a unimodal relationship with potential evapotranspiration. Our results also showed that precipitation played a more substantial role in the model than potential evapotranspiration, but their interaction strengthened the model. In conclusion, this study highlights the dominant role of precipitation in explaining species composition and richness patterns on the alpine Tibetan plateau and suggests conducting research on additional environmental factors affecting water availability in this region.

ABSTRACTAim To test the mechanisms driving bird species richness at broad spatial scales using eigenvector‐based spatial filtering.Location South America.Methods An eigenvector‐based spatial filtering was applied to evaluate spatial patterns in South American bird species richness, taking into account spatial autocorrelation in the data. The method consists of using the geographical coordinates of a region, based on eigenanalyses of geographical distances, to establish a set of spatial filters (eigenvectors) expressing the spatial structure of the region at different spatial scales. These filters can then be used as predictors in multiple and partial regression analyses, taking into account spatial autocorrelation. Autocorrelation in filters and in the regression residuals can be used as stopping rules to define which filters will be used in the analyses.Results Environmental component alone explained 8% of variation in richness, whereas 77% of the variation could be attributed to an interaction between environment and geography expressed by the filters (which include mainly broad‐scale climatic factors). Regression coefficients of environmental component were highest for AET. These results were unbiased by short‐scale spatial autocorrelation. Also, there was a significant interaction between topographic heterogeneity and minimum temperature.Conclusion Eigenvector‐based spatial filtering is a simple and suitable statistical protocol that can be used to analyse patterns in species richness taking into account spatial autocorrelation at different spatial scales. The results for South American birds are consistent with the climatic hypothesis, in general, and energy hypothesis, in particular. Habitat heterogeneity also has a significant effect on variation in species richness in warm tropical regions.

Aim Phylogenetic diversity can provide insight into how evolutionary processes may have shaped contemporary patterns of species richness. Here, we aim to test for the influence of phylogenetic history on global patterns of amphibian species richness, and to identify areas where macroevolutionary processes such as diversification and dispersal have left strong signatures on contemporary species richness.Location Global; equal‐area grid cells of approximately 10,000 km2.Methods We generated an amphibian global supertree (6111 species) and repeated analyses with the largest available molecular phylogeny (2792 species). We combined each tree with global species distributions to map four indices of phylogenetic diversity. To investigate congruence between global spatial patterns of amphibian species richness and phylogenetic diversity, we selected Faith’s phylogenetic diversity (PD) index and the total taxonomic distinctness (TTD) index, because we found that the variance of the other two indices we examined (average taxonomic distinctness and mean root distance) strongly depended on species richness. We then identified regions with unusually high or low phylogenetic diversity given the underlying level of species richness by using the residuals from the global relationship of species richness and phylogenetic diversity.Results Phylogenetic diversity as measured by either Faith’s PD or TTD was strongly correlated with species richness globally, while the other two indices showed very different patterns. When either Faith’s PD or TTD was tested against species richness, residuals were strongly spatially structured. Areas with unusually low phylogenetic diversity for their associated species richness were mostly on islands, indicating large radiations of few lineages that have successfully colonized these archipelagos. Areas with unusually high phylogenetic diversity were located around biogeographic contact zones in Central America and southern China, and seem to have experienced high immigration or in situ diversification rates, combined with local persistence of old lineages.Main conclusions We show spatial structure in the residuals of the relationship between species richness and phylogenetic diversity, which together with the positive relationship itself indicates strong signatures of evolutionary history on contemporary global patterns of amphibian species richness. Areas with unusually low and high phylogenetic diversity for their associated richness demonstrate the importance of biogeographic barriers to dispersal, colonization and diversification processes.

Global congruence between cuckoo species richness and biodiversity hotspots

In this study, we developed a simulation model based on the ecological and evolutionary dynamics of geographical ranges, to understand the role of species’ environmental tolerances and the strength of the environmental gradient in determining spatial patterns in species richness. Using an one‐dimensional space, we present the model and dissect its parameters. Also, we test the ability of the model to simulate richness in complex two‐dimensional domains and to fit real patterns in species richness, using South American Tyrannidae as an example. We found that a mid‐spatial peak in species richness arises spontaneously under conditions of high environmental tolerances and/or a weak environmental gradient, since this condition causes wide species’ geographic ranges, which are constrained by domain's boundary and tend to overlap in the middle. Our model was also a good predictor of real patterns in species richness, especially under conditions of high environmental strength and small species’ tolerance. We conclude that this kind of spatial simulation models based on species’ physiological tolerance may be an important tool to understand the evolutionary dynamics of species’ geographic ranges and in spatial patterns of species richness.

Aim We studied the relationship between the size and isolation of islands and bat species richness in a near‐shore archipelago to determine whether communities of vagile mammals conform to predictions of island biogeography theory. We compared patterns of species richness in two subarchipelagos to determine whether areaper seor differences in habitat diversity explain variations in bat species richness.Location Islands in the Gulf of California and adjacent coastal habitats on the Baja California peninsula in northwest Mexico.Methods Presence–absence surveys for bats were conducted on 32 islands in the Gulf of California using acoustic and mist‐net surveys. We sampled for bats in coastal habitats of four regions of the Baja peninsula to characterize the source pool of potential colonizing species. We fitted a semi‐log model of species richness and multiple linear regression and used Akaike information criterion model selection to assess the possible influence of log10area, isolation, and island group (two subarchipelagos) on the species richness of bats. We compared the species richness of bats on islands with greater vegetation densities in the southern gulf (n = 20) with that on drier islands with less vegetation in the northern gulf (n = 12) to investigate the relationship between habitat diversity and the species richness of bats.Results Twelve species of bats were detected on islands in the Gulf of California, and 15 species were detected in coastal habitats on the Baja peninsula. Bat species richness was related to both area and isolation of islands, and was higher in the southern subarchipelago, which has denser vegetation. Log10area was positively related to bat species richness, which increased by one species for every 5.4‐fold increase in island area. On average, richness declined by one species per 6.25 km increase in isolation from the Baja peninsula.Main conclusions Our results demonstrate that patterns of bat species richness in a near‐shore archipelago are consistent with patterns predicted by the equilibrium theory of island biogeography. Despite their vagility, bats may be more sensitive to moderate levels of isolation than previously expected in near‐shore archipelagos. Differences in vegetation and habitat xericity appear to be associated with richness of bat communities in this desert ecosystem. Although observed patterns of species richness were consistent with those predicted by the equilibrium theory, similar relationships between species richness and size and isolation of islands may arise from patch‐use decision making by individuals (optimal foraging strategies).