Some halogenated anticancer agents, role of halide (-X) and their interaction mechanism with AT/GC base pairs: A computational study

Abstract

Recently, a new class of halogen-based active anticancer agents have widely been developed which shows effective binding with AT/GC base pairs of DNA nucleobases. Usually intercalation, groove binding and covalent binding mechanisms are the most common drug-DNA binding pathways; but, the groove binding mechanism plays a crucial role in the stability of such drug-DNA complexes. As anticancer agent-DNA nucleobase interactions are very difficult to investigate by using common experimental techniques; therefore, theoretical methods may be quite helpful to analyze the proper mode of interaction for such drug-DNA systems. Past literature reveals that, quantum mechanical (QM) density functional theory (DFT) method is one of the best known tool for analyzing the different binding modes of halogenated anticancer agents with DNA nucleobases. Moreover, the halogen-bonding interaction in any biological system is fundamentally understood by investigating the mechanism of donor-acceptor complex formation between donor halogens and acceptor atoms within a receptor; such study is very competent for exploring the favoured anticancer agent-DNA interaction. In this current work, our main objective is to explore the effect of some intercalating and groove binding halogen-based anticancer agents with DNA nucleobase using computational method.