Abstract

Mitochondrial DNA (mtDNA) maintenance is critical for oxidative phosphorylation (OXPHOS) since some subunits of the respiratory chain complexes are mitochondrially encoded. Pathological mutations in nuclear genes involved in the mtDNA metabolism may result in a quantitative decrease in mtDNA levels, referred to as mtDNA depletion, or in qualitative defects in mtDNA, especially in multiple deletions. Since, in the last decade, most of the novel mutations have been identified through whole-exome sequencing, it is crucial to confirm the pathogenicity by functional analysis in the appropriate model systems. Among these, the yeast Saccharomyces cerevisiae has proved to be a good model for studying mutations associated with mtDNA instability. This review focuses on the use of yeast for evaluating the pathogenicity of mutations in six genes, MPV17/SYM1, MRM2/MRM2, OPA1/MGM1, POLG/MIP1, RRM2B/RNR2, and SLC25A4/AAC2, all associated with mtDNA depletion or multiple deletions. We highlight the techniques used to construct a specific model and to measure the mtDNA instability as well as the main results obtained. We then report the contribution that yeast has given in understanding the pathogenic mechanisms of the mutant variants, in finding the genetic suppressors of the mitochondrial defects and in the discovery of molecules able to improve the mtDNA stability.

Highlights

  • Mitochondrial DNA maintenance is critical for oxidative phosphorylation (OXPHOS) since some subunits of the respiratory chain complexes are mitochondrially encoded

  • We focus on the use of yeast for studying pathological mutations in nuclear genes associated with Mitochondrial DNA (mtDNA) instability, underlying the methodologies used to construct the models and to study the phenotypes associated with mtDNA instability and the main findings to which yeast has contributed [50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,71,72,74,75,76,77,78,79,80,81,82,83,84]

  • Thanks to its petite positivity, the effects of nuclear mutant alleles on mtDNA stability can be measured through the determination of the petite frequency, which is the ratio between the number of petite colonies and the number of total colonies deriving from a population of cells

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Summary

Construction of the Model Systems

The use of the homologous complementation is based on the hypothesis that, if an amino acid is conserved during evolution, or lies in a conserved region, it should carry out the same function in all the orthologous proteins For this reason, if the substitution in the yeast gene results in an affected phenotype, it is very likely that the human substitution is pathological; on the contrary, if no detrimental phenotype is observed in yeast, it cannot be excluded that it is not pathological in humans. In the case of homologous complementation, it is possible to introduce the mutation on the yeast genomic locus through specific techniques such as Delitto Perfetto or the CRISPR/Cas (reviewed in [87]); in most cases, the mutant strain is obtained by one-step gene disruption of the gene under analysis [88] and the transformation with wild-type or mutant alleles introduced in a cloning centromeric plasmid under its natural promoter. Only strains that have lost the URA3 plasmid and that contain the plasmid harboring the mutant allele can grow

Evaluation of mtDNA Instability
Evaluation of the mtDNA Levels
Genes Studied in Yeast
Use of the Yeast Models for the Identification of Drugs by Means of a Drug
Conclusions
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