Abstract

We present here a detailed analysis of benzyl isocyanide isomerization as a test case for the ability of different theoretical methods to treat changes in internal rotational degrees of freedom during a reaction. In this reaction, the phenyl rotates freely in the reactant, but has hindered rotation at the transition state; this yields a negative contribution to the reaction entropy. Free energy of activation, internal energy of activation, and entropy of activation were quantified using both thermodynamic integration and harmonic frequency analysis. Compared with experiment, thermodynamic integration generated more accurate activation parameters than the harmonic frequency analysis. A hindered rotor model was also applied to retrieve thermodynamic properties of phenyl rotation at the reactant and at the transition state. The results from this hindered rotor calculation were used to improve the results from the harmonic frequency analysis as well as to verify that the decrease in entropy from the phenyl rotation hindered at the transition state is a major contributor to the entropy of activation seen experimentally in this reaction.

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