Abstract

There is a consensus that the interaction of organic molecules with the surfaces of naturally-occurring minerals might have played a crucial role in chemical evolution and complexification in a prebiotic era. The hurdle of an overly diluted primordial soup occurring in the free ocean may have been overcome by the adsorption and concentration of relevant molecules on the surface of abundant minerals at the sea shore. Specific organic–mineral interactions could, at the same time, organize adsorbed molecules in well-defined orientations and activate them toward chemical reactions, bringing to an increase in chemical complexity. As experimental approaches cannot easily provide details at atomic resolution, the role of in silico computer simulations may fill that gap by providing structures and reactive energy profiles at the organic–mineral interface regions. Accordingly, numerous computational studies devoted to prebiotic chemical evolution induced by organic–mineral interactions have been proposed. The present article aims at reviewing recent in silico works, mainly focusing on prebiotic processes occurring on the mineral surfaces of clays, iron sulfides, titanium dioxide, and silica and silicates simulated through quantum mechanical methods based on the density functional theory (DFT). The DFT is the most accurate way in which chemists may address the behavior of the molecular world through large models mimicking chemical complexity. A perspective on possible future scenarios of research using in silico techniques is finally proposed.

Highlights

  • With respect to the period ranging from the Big Bang (~14.5 Ga) to the emergence of the first forms of life, there is a consensus that the process took place through a set of organizational events

  • Comparison with the spectroscopic data was not possible since Gly was not identified to be adsorbed on the surface because, according to the authors, the amino acid preferred to remain solvated in water solution

  • The most recent in silico studies involved in prebiotic chemistry of the early

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Summary

Introduction

With respect to the period ranging from the Big Bang (~14.5 Ga) to the emergence (and survival) of the first forms of life (estimated at ~3.7 Ga), there is a consensus that the process took place through a set of organizational events. Oligomerization was proved by coupling a system with glycylglycine to metaphosphate hydrolysis with catalytic support by Mg2+ ions [77] or by using diamidophosphate (DAP) derived from trimetaphosphate and (amido)phosphorylates to provide a wide variety of (pre)biological building blocks (nucleosides/tides, amino acids, and lipid precursors) under aqueous conditions, without the need for a condensing agent [78] As this account focuses on the quantum mechanical simulations of the role of mineral surfaces, the reader interested in a whole account of the details of all possible scenarios compatible with a prebiotic origin of life may refer to [1,2,3,4,5,6,7,8,9], as well more recent work [79].

Quantum Mechanical Methods
The Periodic Boundary Conditions Approach
Surface
In Silico Prebiotic Studies on Mineral–Organic Interactions
The Finite Cluster Approach
Iron Sulphides
Titanium Dioxide
Method
Summary
Transition
Silica
Silica and Silicates
11. Different
Findings
Conclusions and Perspectives
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