Abstract
Locomotor activity rhythms are controlled by a network of ~150 circadian neurons within the adult Drosophila brain. They are subdivided based on their anatomical locations and properties. We profiled transcripts “around the clock” from three key groups of circadian neurons with different functions. We also profiled a non-circadian outgroup, dopaminergic (TH) neurons. They have cycling transcripts but fewer than clock neurons as well as low expression and poor cycling of clock gene transcripts. This suggests that TH neurons do not have a canonical circadian clock and that their gene expression cycling is driven by brain systemic cues. The three circadian groups are surprisingly diverse in their cycling transcripts and overall gene expression patterns, which include known and putative novel neuropeptides. Even the overall phase distributions of cycling transcripts are distinct, indicating that different regulatory principles govern transcript oscillations. This surprising cell-type diversity parallels the functional heterogeneity of the different neurons.
Highlights
Most organisms possess a circadian clock, which allows for the adaptation and anticipation of the daily oscillations of day and night
In the fruit fly Drosophila melanogaster, ~150 brain neurons contain the circadian machinery and are critical for controlling behavior. Several subgroups of these clock neurons have been identified by their anatomical locations and specific functions
Our work aims to profile these neurons and to characterize their molecular contents: what to they contain and how do they differ? To this end, we have purified 3 important subgroups of clock neurons and identified their expressed genes at different times of day
Summary
Most organisms possess a circadian clock, which allows for the adaptation and anticipation of the daily oscillations of day (light) and night (dark). The circadian clock of Drosophila melanogaster drives a 24-hour locomotor activity rhythm, which includes bouts of morning and evening activity. This rhythmic behavior is controlled by a molecular clock, which includes transcriptional negative feedback loops that are conserved from insects to mammals. Clock (CLK) and Cycle (CYC) form a heterodimeric transcription factor that functions as the central circadian transcriptional activator. CLK/CYC activates the expression of two transcription factor genes, timeless (tim) and period (per) in the late morning. CLK/CYC start the cycle over again by activating tim and per This negative feedback leads to oscillating gene expression for per and tim as well as many other CLK/CYC controlled genes. The cyclical expression of many different genes provides temporal control of different behaviors or outputs of the clock; they include for example feeding and sleep (reviewed in [1], [2])
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