Response of soil microbial biomass and community composition to chronic nitrogen additions at Harvard forest

Abstract

Soil microbial communities may respond to anthropogenic increases in ecosystem nitrogen (N) availability, and the microbial response may ultimately feed back on ecosystem carbon and N dynamics. We examined the long-term effects of chronic N additions on soil microbes by measuring soil microbial biomass, composition and substrate utilization patterns in pine and hardwood forests at the Harvard Forest Chronic N Amendment Study. Functional and structural genes for important N cycling processes were studied using DNA community profiles. In the O horizon soil of both stands, N additions decreased microbial biomass C as determined by chloroform fumigation-extraction. Utilization of N-containing substrates was lower in N-treated pine soils than in the controls, suggesting that N additions reduced potential microbial activity in the pine stand. Counts of fungi and bacteria as determined by direct microscopy and culture techniques did not show a clear response to N additions. Nitrogen additions, however, strongly influenced microbial community DNA profiles. The ammonia monooxygenase gene (amoA) generally was found in high N-treated soils, but not in control soils. The nifH gene for N2-fixation was generally found in all soils, but was more difficult to amplify in the pine N-treated soil than the controls, suggesting that the population of N2-fixers was altered by N additions. The 16S rDNA gene for Nitrobacter was found in all samples, but distinct differences among DNA profiles were observed in the pine B horizon in the control, low N, and high N-treated plots. Our findings indicate that chronic N additions decreased chloroform microbial carbon and altered microbial community profiles. These changes in microbial community structure may be an important component of the response of terrestrial ecosystems to human-accelerated N supply.