Rapid high-fidelity mapping using single-shot overlapping-echo acquisition and deep learning reconstruction.

Abstract

To develop and evaluate a single-shot quantitative MRI technique called GRE-MOLED (gradient-echo multiple overlapping-echo detachment) for rapid mapping. In GRE-MOLED, multiple echoes with different TEs are generated and captured in a single shot of the k-space through MOLED encoding and EPI readout. A deep neural network, trained by synthetic data, was employed for end-to-end parametric mapping from overlapping-echo signals. GRE-MOLED uses pure GRE acquisition with a single echo train to deliver maps less than 90 ms per slice. The self-registered B0 information modulated in image phase was utilized for distortion-corrected parametric mapping. The proposed method was evaluated in phantoms, healthy volunteers, and task-based FMRI experiments. The quantitative results of GRE-MOLED mapping demonstrated good agreement with those obtained from the multi-echo GRE method (Pearson's correlation coefficient=0.991 and 0.973 for phantom and in vivo brains, respectively). High intrasubject repeatability (coefficient of variation <1.0%) were also achieved in scan-rescan test. Enabled by deep learning reconstruction, GRE-MOLED showed excellent robustness to geometric distortion, noise, and random subject motion. Compared to the conventional FMRI approach, GRE-MOLED also achieved a higher temporal SNRand BOLD sensitivity in task-based FMRI. GRE-MOLED is a new real-time technique for quantification with high efficiency and quality, and it has the potential to be a better quantitative BOLD detection method.