Abstract
Abstract This study applied whole-metagenomics shotgun sequencing to evaluate the effects of live yeast supplementation on functional potential of rumen microbiota in beef cattle. Eight rumen-cannulated Holstein steers were assigned randomly to 1 of 2 treatments in cross-over design with two 25-d experimental periods and a 10-d wash-out between the two periods. The steers were housed in individual pens and were fed 50% concentrate and 50% red clover hay ad libitum. Dietary treatments were (1) control (CON; basal diet) and (2) yeast (YEA; basal diet plus 15 g/d of yeast product; PMI, Arden Hills, MN, USA). Rumen fluid samples were collected at 3, 6 and 9 h after feeding on the last day of each period. Sequencing was done on an Illumina HiSeq 2500. Differences in the relative abundance of taxa at the species level were analyzed using the GLIMMIX procedure of SAS using a model that included the effects of treatment, period, and their interaction. Dietary yeast supplementation increased (P < 0.05) the relative abundance of carbohydrate-fermenting bacteria, such as Ruminococcus albus, R. champanellensis, R. bromii, and R. obeum, and lactate-utilizing bacteria, such as Megasphera elsdenii, Desulfovibrio desulfuricans, and D. vulgaris. A total of 154 differentially abundant microbial genes (DAGs) were obtained (false discovery rate < 0.01). Kyoto Encyclopedia of Genes and Genomes annotation analysis of the DAGs revealed that pathways involving amino sugar and nucleotide sugar metabolism, oxidative phosphorylation, pantothenate and CoA biosynthesis, beta-alanine metabolism, and polyketide sugar unit biosynthesis were enriched in steers fed YEA. Annotation of the DAGs in carbohydrate-active enzymes database revealed that genes coding for enzymes belonging to glycoside hydrolases, glycosyltransferases, and carbohydrate binding modules were enriched in steers fed YEA. These findings confirm the efficacy of live S. cerevisiae product at reducing redox potential and increasing cellulolytic and lactate-utilizing activities in the rumen.
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