Prototropic tautomers of 5-methylcytosine and enthalpy changes of their protonation, deprotonation, and deamination: Hybrid density functional B3LYP study

Abstract

Molecular and thermodynamic properties such as geometric parameters, dipole moments, vibrational frequencies, the first ionization potentials, relative tautomerization energies, and tautomeric equilibrium constants of all prototropic tautomers of 5-methylcytosine have been studied at the hybrid density functional level B3LYP/6-31+G(d,p). The methylation on the C5 atom does not lead to significant geometric deformation of the pyrimidine structures of the corresponding tautomers of cytosine, which maintains the similar stability order. The tautomeric species 2-oxo-4-amino [T(0)], 2-hydroxy-4-amino [T(1-2s) and T(1-2t)], and trans-2-oxo-4-imino [T(3-4t)] are predominated in the gas phase. The zwitterionic conformers of tautomerism [T(1-4)] and protonation [P(4), P(1-2s-4), P(1-2t-4), and P(1-3-4)] are investigated for the first time due to their close relationship with deamination during genetic repair. Enthalpy changes (ΔrH) of protonation, deprotonation, and deamination are calculated for these tautomeric species at room temperature; it is noted that the relative enthalpies [δ(ΔH)] of the tautomers are rationalized well in terms of a second-order polynomial of the sum of the mean ΔrH values of protonation and deprotonation processes. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002