Abstract

MCBIOS 2009 was held February 20–21, 2009 at the Hunter Henry Center in Starkville, Mississippi on the Mississippi State University campus. The conference was hosted by the four research universities in Mississippi comprising the Mississippi Computational Biology Consortium – Jackson State University (JSU), Mississippi State University (MSU), the University of Mississippi (UM), and the University of Southern Mississippi (USM). Dr. Dawn Wilkins of UM and Dr. Susan Bridges of MSU served as conference co-chairs. Keynote speakers were Dr. Laura Elnitski, Head of the Genomic Functional Analysis Section at the National Human Genome Research Institute (NHGRI), Howard Cash, President and CEO of Gene Codes Corporation, and Dr. Cathy Wu, Director of the Protein Information Resource (PIR). Dr. Raphael Isokpehi of JSU organized a panel discussion entitled Careers in Computational Biology and Bioinformatics: Perspective from Employers and Students. Panelists were Dr. Ed Perkins of the U.S. Army Engineering Research and Development Center, Robert Cottingham of Oak Ridge National Laboratory (ORNL), Dr. Doris M. Kupfer, Federal Aviation Administration, James C. Fuscoe, FDA National Center for Toxicological Research, and Cynthia Jeffries, student intern at ORNL. Over 40 student and faculty attendees also participated in the Speed Networking event organized by Dr. Isokpehi and featured in a recent Science Careers article [1]. Each person in the event spent 3 minutes talking to twenty other participants in the two hour session providing students an opportunity to interact with employers and with students from other universities in the region. Dr. Bindu Nanduri and Dr. Andy Perkins, both of MSU managed the setup, judging, and scoring of 80 posters. Monetary awards were provided by Dr. Ed Perkins. Student poster award winners were: first place – Eric Morales of the University of New Orleans (UNO), second place Teresia Buza of MSU, third place – Prashanti Manda of MSU and honorable mention to Amanda Alba of the UNO, Surya Saha of MSU and Sudhir Chowbina of the Indiana University School of Informatics. Student winners for oral presentations were: first place – Enis Afgan of the University of Alabama at Birmingham, second place – Lipi R. Archarya of UNO, and third place – Anastasia Chueva of Mississippi Valley State University.

Highlights

  • Proceedings summary Thirty-two papers from the 2009 conference were submitted to be considered for inclusion in this supplement, and of them a total of 20 were accepted (62.5% accept rate), making this year’s Proceedings the most stringent to date

  • Chavan et al describe Network Analysis Toolbox in R (NATbox), which provides a menu-driven GUI for modeling and analysis of functional relationships inferred from gene expression profiles

  • It is suited for interdisciplinary researchers and biologists with minimal programming experience who would like to use systems biology approaches without delving into the algorithmic aspects, and can be a useful demonstration/teaching tool

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Summary

Introduction

MCBIOS 2009 was held February 20–21, 2009 at the Hunter Henry Center in Starkville, Mississippi on the Mississippi State University campus. Chavan et al describe Network Analysis Toolbox in R (NATbox), which provides a menu-driven GUI for modeling and analysis of functional relationships inferred from gene expression profiles It is suited for interdisciplinary researchers and biologists with minimal programming experience who would like to use systems biology approaches without delving into the algorithmic aspects, and can be a useful demonstration/teaching tool. Http://www.biomedcentral.com/1471-2105/10/S11/S1 data as a guide for identifying biologically consistent results, the authors demonstrate that highly consistent biological information can be generated from different microarray platforms. Genomic analysis T.J. Jankun-Kelly and colleagues present a method to visually explore conserved domains on Multiple Sequence Alignments [61], simultaneously communicating the relative similarity of proteins across species and the differences in how function is expressed via conserved domains.

Bottoms CA and Xu D
Churbanov A and Winters-Hilt S
Giles CB and Wren JD
13. Ptitsyn A
17. Roux B and Winters-Hilt S
24. Vyshemirsky V and Girolami M
27. Suderman M and Hallett M
31. Schmidt H
35. Ptitsyn A
41. Xia T and Dickerson JA: OmicsViz
43. Kao HL and Gunsalus KC
50. Li H and Zhan M
52. Hermans F and Tsiporkova E
54. Novikov E and Barillot E
59. Perkins AD and Langston MA
Findings
66. Chen B and Johnson M
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