Abstract

Human Pex19p binds a broad spectrum of peroxisomal membrane proteins (PMPs). It has been proposed that this peroxin may: (i) act as a cycling PMP receptor protein, (ii) facilitate the insertion of newly synthesized PMPs into the peroxisomal membrane, or (iii) function as a chaperone to associate and/or dissociate complexes comprising integral PMPs already in the peroxisomal membrane. We previously demonstrated that human Pex19p binds peroxisomal integral membrane proteins at regions distinct from their sorting sequences. Here we demonstrate that a mutant of Pex13p that fails to bind to Pex19p nevertheless targets to and integrates into the peroxisomal membrane. In addition, through in vitro biochemical analysis, we show that Pex19p competes with Pex5p and Pex13p for binding to Pex14p, supporting a role for this peroxin in regulating assembly/disassembly of membrane-associated protein complexes. To further examine the molecular mechanism underlying this competition, six evolutionarily conserved amino acids in the Pex5p/Pex13p/Pex19p binding domain of Pex14p were subjected to site-directed mutagenesis and the corresponding mutants functionally analyzed. Our results indicate that the physically overlapping binding sites of Pex14p for Pex5p, Pex13p, and Pex19p are functionally distinct, suggesting that competition occurs through induction of structural changes, rather than through direct competition. Importantly, we also found that amino acid substitutions resulting in a strongly reduced binding affinity for Pex13p affect the peroxisomal localization of Pex14p.

Highlights

  • To date, peroxisome biogenesis studies in a number of evolutionarily diverse organisms have identified 29 gene products (1) called peroxins

  • 1 The abbreviations used are: Pexp, peroxin; ALDP, adrenoleukodystrophy protein; ALDPR, adrenoleukodystrophy-related protein; CHO, Chinese hamster ovary; GDH, glutamate dehydrogenase; GFP, enhanced green fluorescent protein; GST, glutathione S-transferase; Hs, Homo sapiens; mPTS, membrane peroxisomal targeting signal; Pp, Pichia pastoris; peroxisomal membrane proteins (PMPs), peroxisomal membrane protein; PMP22, 22 kDa PMP; PMP34, 34 kDa PMP; PMP70, 70 kDa PMP; SH3, Src homology corresponding to the order of discovery), which are essential for formation of the organelle

  • Combined with our controls showing that soluble peroxisomal matrix proteins, but not peroxisomal integral membrane proteins, can be completely separated from the membrane fraction (Figs. 3B and 4B), these results indicate that Pex19p is not directly involved in the insertion process of Pex13p into the peroxisomal lipid bilayer

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Summary

The abbreviations used are

Peroxin; ALDP, adrenoleukodystrophy protein; ALDPR, adrenoleukodystrophy-related protein; CHO, Chinese hamster ovary; GDH, glutamate dehydrogenase; GFP, enhanced green fluorescent protein; GST, glutathione S-transferase; Hs, Homo sapiens; mPTS, membrane peroxisomal targeting signal; Pp, Pichia pastoris; PMP, peroxisomal membrane protein; PMP22, 22 kDa PMP; PMP34, 34 kDa PMP; PMP70, 70 kDa PMP; SH3, Src homology corresponding to the order of discovery), which are essential for formation of the organelle. The observation that Pex19p interacts with the mPTSs of PpPex2p, HsPex11p␤, HsPex13p, HsPex14p, HsPex16p, HsPMP22, HsPMP34, HsPMP70, HsALDP, and HsALDPR (6 –11), and that a portion of cellular Pex19p is found associated with the outer surface of peroxisomes (6, 12), makes this peroxin a reasonable candidate for a cycling PMP receptor protein. For a number of PMPs including PpPex3p, PpPex13p, PpPex17p, PpPex22p, HsPex3p, HsPex12p, HsPMP70, and RnPex3p, the Pex19p interaction domain and the targeting domain do not overlap at all (7, 10, 13–15) These results argue against a role of Pex19p as a general cycling PMP receptor protein. Based on data pointing to a role for Pex19p in interacting with already inserted PMPs, Subramani and coworkers (7) suggested that Pex19p may be functioning as a (dis)assembly factor, or as a chaperone, to regulate membrane-associated protein complexes. BglII/PstI digest of PCR product: Template pMF101 (Pex14.3, Pex14.4) BglII/PstI digest of PCR product: Template pMF999A (Pex14.3, Pex14.4) Template pMF999B (Pex14.3, Pex14.4) Template pMF999C (Pex14.3, Pex14.4) Template pMF999D (Pex14.3, Pex14.4) Template pMF999E (Pex14.3, Pex14.4) Template pMF999F (Pex14.3, Pex14.4) BamHI/SmaI fragment of pMF132 (10)

EXPERIMENTAL PROCEDURES
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DISCUSSION
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