Abstract
Pyrus ussriensis Maxim. is native to the northern part of China, but whose habitats are currently being destroyed by environmental changes and human deforestation. An investigation of population structure and genetic diversity of wild Ussurian pear is a priority in order to acquire fundamental knowledge for conservation. A total of 153 individuals of wild Ussurian pear from the main habitats, Heilongjiang, Jilin, and Inner Mongolia in China, possessed low genetic diversity as a result of habitat fragmentation. The genetic diversity of the populations in Inner Mongolia and north east of Heilongjiang was especially low and there was the possibility of inbreeding. Wild Ussurian pears were divided into 5 groups based on the Bayesian clustering method using 20 nuclear SSRs (nSSRs) and 5 groups by haplotype distributions using 16 chloroplast SSRs (cpSSRs), and the populations in Inner Mongolia and north east of Heilongjiang represented unique genotypes. AMOVA indicated there was a 20.05% variation in nSSRs and a 44.40% variation in cpSSRs among populations. These values are relatively high when compared to those of other tree species. Haplotype E, positioned in the center of the cpSSR analysis network and showed the largest number of connections with other haplotypes, represented the most important haplotype. Inner Mongolia and the north east of Heilongjiang are two areas that need urgent conservation because of their genetic vulnerability and peculiarity. We determined 4 conservation units based on the clustering by nSSRs and cpSSRs, and geographic factor. This information is helpful in deciding the conservation strategies for wild Ussurian pear in China.
Highlights
Investigating the genetic population structure, which includes genetic diversity, population differentiation and degree of gene flow [1], is very important in revealing the origin and the PLOS ONE | DOI:10.1371/journal.pone.0133686 August 7, 2015Population Structure of Wild Pyrus ussuriensis Maxim. in China process of domestication
These chloroplast SSRs (cpSSRs) harbored enough genetic diversity to represent the genetic variation of the Pyrus species
Wild Ussurian pear in China were divided into 5 groups based on the haplotype distribution; (1) Inner Mongolia; IMQS, IMTHL, IMPJG, IMRSL, IMLMD, and IMSLG, (2) The north of Heilongjiang; HLSWX, HLYCS2, HLYCS3 and HLFYX, (3) HLYCS1: This population had unique haplotype and didn’t have the haplotype E which is representative haplotype in Heilongjiang, (4) HLMTZ and (5) JLGZL
Summary
Investigating the genetic population structure, which includes genetic diversity, population differentiation and degree of gene flow [1], is very important in revealing the origin and the PLOS ONE | DOI:10.1371/journal.pone.0133686 August 7, 2015Population Structure of Wild Pyrus ussuriensis Maxim. in China process of domestication. China is one of three diversity centers for cultivated pear [4], there are various kinds of Pyrus species in China. Main cultivars in China are (1) Sand pear (P. pyrifolia), (2) Xingjiang pear (P. sinkiangensis Yu), (3) White pear (P. bretschneideri Rehd.), and (4) Ussurian pear (P. ussuriensis Maxim.). The differences between Ussurian pear and the other Pyrus species are as follows; (1) Morphological feature: short peduncle and pedicle, small fruit, the fruit shape is round or oblate, that skin color is yellow or brown, and the diameter is ranging from 2 to 6 cm with a 1 to 2 cm short pedicle [5]. There are over 150 cultivars originated from this species in the northern east of China, but the domestication process haven’t revealed
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