Abstract
Pleomorphic xanthoastrocytoma (PXA) in its classic manifestation exhibits distinct morphological features and is assigned to CNS WHO grade 2 or grade 3. Distinction from glioblastoma variants and lower grade glial and glioneuronal tumors is a common diagnostic challenge. We compared a morphologically defined set of PXA (histPXA) with an independent set, defined by DNA methylation analysis (mcPXA). HistPXA encompassed 144 tumors all subjected to DNA methylation array analysis. Sixty-two histPXA matched to the methylation class mcPXA. These were combined with the cases that showed the mcPXA signature but had received a histopathological diagnosis other than PXA. This cohort constituted a set of 220 mcPXA. Molecular and clinical parameters were analyzed in these groups. Morphological parameters were analyzed in a subset of tumors with FFPE tissue available. HistPXA revealed considerable heterogeneity in regard to methylation classes, with methylation classes glioblastoma and ganglioglioma being the most frequent mismatches. Similarly, the mcPXA cohort contained tumors of diverse histological diagnoses, with glioblastoma constituting the most frequent mismatch. Subsequent analyses demonstrated the presence of canonical pTERT mutations to be associated with unfavorable prognosis among mcPXA. Based on these data, we consider the tumor type PXA to be histologically more varied than previously assumed. Histological approach to diagnosis will predominantly identify cases with the established archetypical morphology. DNA methylation analysis includes additional tumors in the tumor class PXA that share similar DNA methylation profile but lack the typical morphology of a PXA. DNA methylation analysis also assist in separating other tumor types with morphologic overlap to PXA. Our data suggest the presence of canonical pTERT mutations as a robust indicator for poor prognosis in methylation class PXA.
Highlights
Pleomorphic xanthoastrocytoma (PXA) was recognized as a distinct entity in 1979 [10]
Homozygous deletion of CDKN2A/B (60–95%) and BRAF V600E mutation (60–78%) have emerged as predominant features, each seen in the majority of PXA [4, 8, 12, 20, 21, 29]
We identified 220 tumors in our data bank with the signature of methylation class PXA and a calibrated score of 0.9 or higher, irrespective of initial histological diagnosis (Additional file 2: Table 2)
Summary
Pleomorphic xanthoastrocytoma (PXA) was recognized as a distinct entity in 1979 [10]. Homozygous deletion of CDKN2A/B (60–95%) and BRAF V600E mutation (60–78%) have emerged as predominant features, each seen in the majority of PXA [4, 8, 12, 20, 21, 29]. On the benign end of the malignancy spectrum, PXA can harbor morphologic and molecular similarities to lower grade tumors such as ganglioglioma. Gangliogliomas carry BRAF V600E mutation in the majority of the cases and have been reported occasionally to contain CDKN2A/B homozygous deletions [19]. This renders PXA difficult to distinguish from morphological mimics on both ends of the malignancy spectrum
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