Photolysis of phosphodiester bonds in plasmid DNA by high intensity UV laser irradiation.

Abstract

Abstract— The cleavage of phosphodiester bonds in DNA exposed to high intensity UV laser pulses in aerated aqueous solution has been investigated using a krypton fluoride excimer laser (248 nm) and bacterial plasmid DNA. The dependence of strand breakage on fluence and intensity has been studied in detail and shows that the process is non‐linear with respect to intensity. The relationship between the quantum yield for strand breakage and intensity shows that the strand breakage reaction involves two‐photon excitation of DNA bases. The quantum yield rises with intensity from a lower value of 7 times 10‐5 until a maximum value of 4.5 times 10‐4 is attained at intensities of 1011 W m‐2 and above. This value is approximately fifty‐fold higher than the quantum yield for strand breakage induced by exposure to low density UV irradiation (254 nm, 12 W m‐2). DNA sequencing experiments have shown that strand breakage occurs by the specific cleavage of the phosphodiester bond which lies immediately 3′ to guanine residues in the DNA, leaving some alkali‐labile remnant attached to the terminal phosphate. A mechanism for DNA strand breakage which involves the generation of guanine radical cations is proposed.