Abstract

Abstract BACKGROUND Next-generation sequencing (NGS) is routinely completed for systemic solid tumors; however, its utility is unclear in brain tumors. Our study sought to investigate and compare the impact of NGS on treatment decision-making for glioblastoma and other primary brain tumors. METHODS An IRB-approved retrospective chart review was conducted with patients at Northwestern University who were diagnosed with a primary brain tumor receiving NGS sequencing between October 2013 and February 2020. Tempus reports for each in-house sequencing event along with pertinent medical information from the electronic medical record (EMR) was extracted. Primary brain tumor types assessed included glioblastoma, astrocytoma, oligodendroglioma, and other rare subtypes (including meningioma, ependymoma, ganglioma, pleomorphic xanthoastrocytoma, atypical teratoid rhabdoid tumors, glioneuronal tumors, and CNS lymphomas). NGS-impacted decision-making was defined as a physician prescribing a targeted treatment that corresponded with an actionable mutation in the Tempus report. RESULTS NGS was completed in 261 patients with glioblastoma and 121 patients with other primary brain tumors. NGS impacted decision-making in 12.6% (33) of glioblastoma patients and 9.1% (11) of other brain tumor patients. These figures in grades 1-3 astrocytoma and oligodendroglioma were 9.1% (4 of 44) and 8.1% (3 of 37), respectively. NGS impacted treatment in 10.0% (4 of 40) of all remaining subtypes analyzed. Overall, NGS sequencing data influenced clinical decision-making 11.5% of the time across all brain tumor types. Across the 382 patients assessed, EGFR copy number gain or GOF mutations were targeted most often (52.3% of all mutations targeted), followed by BRAF (11.4%) and IDH1 (11.4%). CONCLUSIONS NGS influences treatment decisions less often in primary brain tumors compared to other systemic cancers; however, NGS should still be considered in primary brain tumor patients, as it impacts treatment decision-making across subtypes. As more targeted therapies become available for CNS tumors, the utility of NGS will only increase.

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