Abstract
Crop diversity is shaped by biological and social processes interacting at different spatiotemporal scales. Here, we combined population genetics and ethnobotany to investigate date palm (Phoenix dactylifera L.) diversity in Siwa Oasis, Egypt. Based on interviews with farmers and observation of practices in the field, we collected 149 date palms from Siwa Oasis and 27 uncultivated date palms from abandoned oases in the surrounding desert. Using genotyping data from 18 nuclear and plastid microsatellite loci, we confirmed that some named types each constitute a clonal line, that is, a true‐to‐type cultivar. We also found that others are collections of clonal lines, that is, ethnovarieties, or even unrelated samples, that is, local categories. This alters current assessments of agrobiodiversity, which are visibly underestimated, and uncovers the impact of low‐intensity, but highly effective, farming practices on biodiversity. These hardly observable practices, hypothesized by ethnographic survey and confirmed by genetic analysis, are enabled by the way Isiwans conceive and classify living beings in their oasis, which do not quite match the way biologists do: a classic disparity of etic versus. emic categorizations. In addition, we established that Siwa date palms represent a unique and highly diverse genetic cluster, rather than a subset of North African and Middle Eastern palm diversity. As previously shown, North African date palms display evidence of introgression by the wild relative Phoenix theophrasti, and we found that the uncultivated date palms from the abandoned oases share even more alleles with this species than cultivated palms in this region. The study of Siwa date palms could hence be a key to the understanding of date palm diversification in North Africa. Integration of ethnography and population genetics promoted the understanding of the interplay between diversity management in the oasis (short‐time scale), and the origins and dynamic of diversity through domestication and diversification (long‐time scale).
Highlights
The date palm, Phoenix dactylifera L., is a major perennial crop of the hot and arid regions in the Middle East and North Africa (Barrow, 1998)
We found that the genetic diversity is mainly distributed between oasis samples versus samples from outside the oasis, as the principal component (PC) 1 mostly draws apart those two types of date palms (Figure 2b)
We studied date palms from Siwa using a combined molecular population genetic and ethnographic approach in order to (a) better understand folk categorization in conjunction with local agrobiodiversity and (b) infer the origins and the dynamic of the diversity found in this oasis and around, by comparing it to the worldwide date palm germplasm
Summary
The date palm, Phoenix dactylifera L., is a major perennial crop of the hot and arid regions in the Middle East and North Africa (Barrow, 1998). Its fruits are sometimes harvested and, rare, it can lead to a new selected and named line of clones, that is, a cultivar Another possibility, highlighted in our previous work in the oasis of Siwa, is to integrate this new genotype into an existing named type, because, from a local perspective, it is the very same variety, the same “form,” or phenotype (Battesti, 2013; Battesti et al, 2018). We increased our sampling of uncultivated individuals from the abandoned oases in the desert nearby Siwa ( known as “feral” in Battesti et al, 2018) This enabled a full assessment of local biodiversity and potential connections between the currently cultivated pool of the oasis and the uncultivated abandoned date palms. Our work aims at documenting the origins of phoeniciculture in Egypt and in North Africa in general
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