Abstract
BackgroundSponges are particularly prone to hiding cryptic species as their paradigmatic plasticity often favors species phenotypic convergence as a result of adaptation to similar habitat conditions. Hemimycale is a sponge genus (Family Hymedesmiidae, Order Poecilosclerida) with four formally described species, from which only Hemimycale columella has been recorded in the Atlanto-Mediterranean basin, on shallow to 80 m deep bottoms. Contrasting biological features between shallow and deep individuals of Hemimycale columella suggested larger genetic differences than those expected between sponge populations. To assess whether shallow and deep populations indeed belong to different species, we performed a phylogenetic study of Hemimycale columella across the Mediterranean. We also included other Hemimycale and Crella species from the Red Sea, with the additional aim of clarifying the relationships of the genus Hemimycale.MethodsHemimycale columella was sampled across the Mediterranean, and Adriatic Seas. Hemimycale arabica and Crella cyathophora were collected from the Red Sea and Pacific. From two to three specimens per species and locality were extracted, amplified for Cytochrome C Oxidase I (COI) (M1–M6 partition), 18S rRNA, and 28S (D3–D5 partition) and sequenced. Sequences were aligned using Clustal W v.1.81. Phylogenetic trees were constructed under neighbor joining (NJ), Bayesian inference (BI), and maximum likelihood (ML) criteria as implemented in Geneious software 9.01. Moreover, spicules of the target species were observed through a Scanning Electron microscope.ResultsThe several phylogenetic reconstructions retrieved both Crella and Hemimycale polyphyletic. Strong differences in COI sequences indicated that C. cyathophora from the Red Sea might belong in a different genus, closer to Hemimycale arabica than to the Atlanto-Mediterranean Crella spp. Molecular and external morphological differences between Hemimycale arabica and the Atlanto-Mediterranean Hemimycale also suggest that Hemimycale arabica fit in a separate genus. On the other hand, the Atlanto-Mediterranean Crellidae appeared in 18S and 28S phylogenies as a sister group of the Atlanto-Mediterranean Hemimycale. Moreover, what was known up to now as Hemimycale columella, is formed by two cryptic species with contrasting bathymetric distributions. Some small but consistent morphological differences allow species distinction.ConclusionsA new family (Hemimycalidae) including the genus Hemimycale and the two purported new genera receiving C. cyathophora and Hemimycale arabica might be proposed according to our phylogenetic results. However, the inclusion of additional Operational Taxonomic Unit (OTUs) appears convenient before taking definite taxonomical decisions. A new cryptic species (Hemimycale mediterranea sp. nov.) is described. Morphologically undifferentiated species with contrasting biological traits, as those here reported, confirm that unidentified cryptic species may confound ecological studies.
Highlights
The discovery of cryptic species is continuously improving our knowledge on real ecosystem biodiversity and functioning, which are intimately related (Frainer, McKie & Malmqvist, 2014)
18S rRNA phylogeny The resulting phylogeny using the 18S rRNA partition on 25 sequences (17 new) of 695 nt. (46 variable positions, from which 38 were parsimony informative) was congruent under Bayesian inference (BI), and maximum likelihood (ML) and just differed in the position of Hemimycale arabica which appeared as a sister group of the remaining Crella spp. and Hemimycale spp. under neighbor joining (NJ) (Fig. S1)
In the BI and ML trees, the two individuals of Hemimycale arabica appeared in unresolved positions while they formed a poorly supported (75%) clade in the tree under the NJ criterion
Summary
The discovery of cryptic species is continuously improving our knowledge on real ecosystem biodiversity and functioning, which are intimately related (Frainer, McKie & Malmqvist, 2014). Molecular based identifications alone do not solve the problem of species misidentification, in particular when the cryptic species have overlapping distributions (e.g., Knowlton & Jackson, 1994; Tarjuelo et al, 2001; De Caralt et al, 2002; Blanquer & Uriz, 2007, 2008; Perez-Portela et al, 2007) In these cases, deep studies on their morphology, biology (e.g., life-history traits), and ecology (e.g., growth dynamics) become crucial to understand the mechanisms underlying their coexistence (Lopez-Legentil et al, 2005; Perez-Portela et al, 2007; Blanquer, Uriz & Agell, 2008; Payo et al, 2013). Strong differences in COI sequences indicated that C. cyathophora from the Red Sea might belong in a different genus, closer to Hemimycale arabica than to the Atlanto-Mediterranean Crella spp. What was known up to now as Hemimycale columella, is formed by
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