Molecular marker based genetic diversity analysis in rice (Oryza sativaL.) using SSR markers

Abstract

Assessment of genetic diversity is very important in rice breeding from the standpoint of selection, conservation and proper utilization. The role of a broad genetic base and systematically characterized germplasm in the crop improvement of cultivated plants has been well recognized. To meet the continuously expanding needs of varietal improvements, the evaluation and characterization of all existing germplasm are required. Genetic variability studies are important in selection of parents for hybridization as sound crop improvement depends upon the magnitude of variability in the base population. In the present investigation 36 rice genotypes were studied for diversity studies using polymorphic SSR markers. These rice genotypes were grouped into two main clusters that is cluster I and II with similarity coefficient (0.00). Cluster I can be sub divided into two minor sub-groups IA, IB, and with similarity coefficient (0.15). Cluster IA consisted of 12 genotypes, whereas cluster IB consisted of 13 genotypes. The second main cluster can be also sub divided into two minor sub-groups that is IIA and IIB (0.25). This indicated presence of considerable diversity in the genotypes studied. Through diversity analysis, highest similarity was observed between cultivar URG-5 and URG-8 followed by NDR-359 and Pusa-6-B. The most diverse cultivars were Akshaya dhan and URG-24.