Abstract
Aconitase (ACO) is a key enzyme that catalyzes the isomerization of citrate to isocitrate in the tricarboxylic acid (TCA) and glyoxylate cycles. The function of ACOs has been well studied in model plants, such as Arabidopsis. In contrast, the evolutionary patterns of the ACO family in land plants are poorly understood. In this study, we systematically examined the molecular evolution and expression divergence of the ACO gene family in 12 land plant species. Thirty-six ACO genes were identified from the 12 land plant species representing the four major land plant lineages: Bryophytes, lycophytes, gymnosperms, and angiosperms. All of these ACOs belong to the cytosolic isoform. Three gene duplication events contributed to the expansion of the ACO family in angiosperms. The ancestor of angiosperms may have contained only one ACO gene. One gene duplication event split angiosperm ACOs into two distinct clades. Two clades showed a divergence in selective pressure and gene expression patterns. The cis-acting elements that function in light responsiveness were most abundant in the promoter region of the ACO genes, indicating that plant ACO genes might participate in light regulatory pathways. Our findings provide comprehensive insights into the ACO gene family in land plants.
Highlights
The tricarboxylic acid (TCA) cycle is called the Krebs cycle or the citric acid cycle
Domain analysis performed by searching the SMART and PROSITE databases showed all 36 putative ACO genes encoded the aconitase domain, indicating that they belonged to the ACO gene family
The duplication history analysis showed that three duplication events had occurred in the ACO family of angiosperms: One in the angiosperm ancestral species, and the other two were monocot-specific
Summary
The tricarboxylic acid (TCA) cycle is called the Krebs cycle or the citric acid cycle. The TCA cycle is the central element of carbon metabolism, which provides electrons for oxidative phosphorylation and intermediates for amino acid biosynthesis. The TCA cycle links the pathway of glycolysis to fatty acid metabolism via the glyoxylate cycle (Nunes-Nesi et al, 2013). As the second step in the TCA cycle, the reversible isomerization of citrate to isocitrate via cisaconitate as an intermediate is catalyzed by aconitase (Peyret et al, 1995). Aconitase (ACO, EC 4.2.1.3), known as aconitate hydratase, is an iron-sulfur protein containing a 4Fe-4S cluster with typical molecular masses around 90 kDa (Beinert et al, 1996). ACO1 is a cytosolic aconitase, called iron-responsive element-binding protein 1 (IRP1), which contains an AcnA_IRP domain. IRP1 can recognize the RNA stem-loop structure of an iron-responsive element (IRE), which is located at the 5′
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