Abstract

Infectious bronchitis virus (IBV) induces respiratory and urogenital disease in chickens. Although IBV replicates in the gastrointestinal tract, enteric lesions are uncommon. We have reported a case of runting-stunting syndrome in commercial broilers from which an IBV variant was isolated from the intestines. The isolate, CalEnt, demonstrated an enteric tissue tropism in chicken embryos and SPF chickens experimentally. Here, we determined the full genome of CalEnt and compared it to other IBV strains, in addition to comparing the pathobiology of CalEnt and M41 in commercial broilers. Despite the high whole-genome identity to other IBV strains, CalEnt is rather unique in its nucleotide composition. The S gene phylogenetic analyses showed great similarity between CalEnt and Cal 99. Clinically, vent staining was slightly more frequent in CalEnt-infected birds than those challenged with M41. Furthermore, IBV IHC detection was more evident and the viral shedding in feces was overall higher with the CalEnt challenge compared with M41. Despite underlying intestinal lesions caused by coccidiosis and salmonellosis vaccination, microscopic lesions in CalEnt-infected chickens were more severe than in M41-infected chickens or controls, supporting the enteric tropism of CalEnt. Further studies in SPF chickens are needed to determine the pathogenesis of the virus, its molecular mechanisms for the enteric tropism, and its influence in intestinal health.

Highlights

  • Infectious bronchitis virus (IBV) belongs to the Gammacoronavirus genus and mainly causes respiratory and urogenital disease in chickens

  • Molecular differences between turkey coronavirus (TCoV) and IBV are mainly found in the S gene, in which homologies are as low as 33%, validating the divergent tissue tropism of these closely related viruses [8]

  • The complete genome homologies revealed that the IBV strains most closely related to CalEnt were Cal99 (94.3%), Cal 56b (94.2%), M41 (94.1%), and ArkDPI (94.1%) (Table S1)

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Summary

Introduction

Infectious bronchitis virus (IBV) belongs to the Gammacoronavirus genus and mainly causes respiratory and urogenital disease in chickens. Genomic changes modulate the virus entry and influence tissue tropism, persistence, virulence, and host range [4]. This variability explains why coronaviruses genetically and antigenically similar to IBV can cause different clinical outcomes. The turkey coronavirus (TCoV) induces severe enteric disease by the viral replication in enterocytes of the jejunum and ileum [5,6,7]. Molecular differences between TCoV and IBV are mainly found in the S gene, in which homologies are as low as 33%, validating the divergent tissue tropism of these closely related viruses [8]

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