Modeling, Simulation and Application of Bacterial Transduction in Genetic Algorithms

Abstract

AbstractAt present, all methods in Evolutionary Computation are bioinspired in the fundamental principles of neo-Darwinism as well as on a vertical gene transfer. Thus, on a mechanism in which an organism receives genetic material from its ancestor. Horizontal, lateral or cross-population gene transfer is any process in which an organism transfers a genetic segment to another one that is not its offspring. Virus transduction is one of the key mechanisms of horizontal gene propagation in microorganism (e.g. bacteria). In the present paper, we model and simulate a transduction operator, exploring a possible role and usefulness of transduction in a genetic algorithm. The genetic algorithm including transduction has been named PETRI (abbreviation of Promoting Evolution Through Reiterated Infection). The efficiency and performance of this algorithm was evaluated using a benchmark function and the 0/1 knapsack problem. The utility was illustrated designing an AM radio receiver, optimizing the main features of the electronic components of the AM radio circuit as well as those of the radio enclosure. Our results shown how PETRI approaches to higher fitness values as transduction probability comes near to 100%. The conclusion is that transduction improves the performance of a genetic algorithm, assuming a population divided among several sub-populations or ‘bacterial colonies’.