Abstract

BackgroundOral tongue squamous cell carcinoma (OTSCC) is one of the most aggressive forms of head and neck/oral cancer (HNOC), and is a complex disease with extensive genetic and epigenetic defects, including microRNA deregulation. Identifying the deregulation of microRNA-mRNA regulatory modules (MRMs) is crucial for understanding the role of microRNA in OTSCC.MethodsA comprehensive bioinformatics analysis was performed to identify MRMs in HNOC by examining the correlation among differentially expressed microRNA and mRNA profiling datasets and integrating with 12 different sequence-based microRNA target prediction algorithms. Confirmation experiments were performed to further assess the correlation among MRMs using OTSCC patient samples and HNOC cell lines. Functional analyses were performed to validate one of the identified MRMs: miR-21-15-Hydroxyprostaglandin Dehydrogenase (HPGD) regulatory module.ResultsOur bioinformatics analysis revealed 53 MRMs that are deregulated in HNOC. Four high confidence MRMs were further defined by confirmation experiments using OTSCC patient samples and HNOC cell lines, including miR-21-HPGD regulatory module. HPGD is a known anti-tumorigenic effecter, and it regulates the tumorigenic actions of Prostaglandin E2 (PGE2) by converts PGE2 to its biologically inactive metabolite. Ectopic transfection of miR-21 reduced the expression of HPGD in OTSCC cell lines, and the direct targeting of the miR-21 to the HPGD mRNA was confirmed using a luciferase reporter gene assay. The PGE2-mediated upregulation of miR-21 was also confirmed which suggested the existence of a positive feed-forward loop that involves miR-21, HPGD and PGE2 in OTSCC cells that contribute to tumorigenesis.ConclusionsWe identified a number of high-confidence MRMs in OTSCC, including miR-21-HPGD regulatory module, which may play an important role in the miR-21-HPGD-PGE2 feed-forward loop that contributes to tumorigenesis.Electronic supplementary materialThe online version of this article (doi:10.1186/s12885-016-2716-0) contains supplementary material, which is available to authorized users.

Highlights

  • Oral tongue squamous cell carcinoma (OTSCC) is one of the most aggressive forms of head and neck/oral cancer (HNOC), and is a complex disease with extensive genetic and epigenetic defects, including microRNA deregulation

  • We first developed a list of putative microRNA-mRNA regulatory modules (MRMs) based on the simple principle that inverse relationships should be anticipated in the expression of a specific microRNA and its functional target gene

  • As anticipated, treating cells with Prostaglandin E2 (PGE2) and CelecoxiB led to up-regulation and downregulation of cell proliferation, respectively, which is consistent with previous observations [33, 34] (Fig. 4e). These results are in agreement with observation made by Lu et al in cholangiocarcinoma [35], which confirm the PGE2-mediated miR-21 up-regulation in OTSCC and suggest a PGE2-miR-21-Hydroxyprostaglandin Dehydrogenase (HPGD) positive feed-forward loop that contributes to tumorigenesis (Fig. 4f)

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Summary

Introduction

Oral tongue squamous cell carcinoma (OTSCC) is one of the most aggressive forms of head and neck/oral cancer (HNOC), and is a complex disease with extensive genetic and epigenetic defects, including microRNA deregulation. Several microRNAs have been functionally classified as oncogenes or tumor suppressors, and the aberrant expression of microRNA has been observed in almost all cancer types including OTSCC [5,6,7,8]. Deregulation of these cancer-associated microRNAs can significantly impact tumor initiation and progression by activating pathways promoting uncontrolled proliferation, favoring survival, inhibiting differentiation, and promoting invasion [9, 10]. The identification and detection of functional microRNA-mRNA regulatory modules (MRMs) are crucial components for understanding of microRNA functions

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