Abstract

Production of fuels and chemicals through microbial fermentation of plant material is a desirable alternative to petrochemical-based production. Fermentative production of biorenewable fuels and chemicals requires the engineering of biocatalysts that can quickly and efficiently convert sugars to target products at a cost that is competitive with existing petrochemical-based processes. It is also important that biocatalysts be robust to extreme fermentation conditions, biomass-derived inhibitors, and their target products. Traditional metabolic engineering has made great advances in this area, but synthetic biology has contributed and will continue to contribute to this field, particularly with next-generation biofuels. This work reviews the use of metabolic engineering and synthetic biology in biocatalyst engineering for biorenewable fuels and chemicals production, such as ethanol, butanol, acetate, lactate, succinate, alanine, and xylitol. We also examine the existing challenges in this area and discuss strategies for improving biocatalyst tolerance to chemical inhibitors.

Highlights

  • Human society has always depended on biomass-derived carbon and energy for nutrition and survival

  • While Metabolic Engineering has enabled extraordinary advances in the production of commodity chemicals and fuels from biomass, some of which are discussed in this work, we have reached the point where biological functions that do not exist in nature are desired

  • Foreign genes may be unstable in host cells due to recombination facilitated by mobile DNA elements, and the mobile DNA elements in E. coli K-12 strain have been deleted [37]

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Summary

Introduction

Human society has always depended on biomass-derived carbon and energy for nutrition and survival. Upon elucidation of the biological code and the development of recombinant DNA technology, we have the tools to do more than just select for observable traits—we are able to rationally modify and design metabolic pathways, proteins, and even whole organisms. Much of this rational modification has been in the form of Metabolic Engineering. While Metabolic Engineering has enabled extraordinary advances in the production of commodity chemicals and fuels from biomass, some of which are discussed in this work, we have reached the point where biological functions that do not exist in nature are desired. We discuss successful examples involving the production of commodity fuels and chemicals, with a focus on D- and Llactate, L-alanine, succinate, ethanol, and butanol

Methods and Tools for Biocatalyst Redesign
Systems Biology Tools
Upstream To be Downstream DNA deleted DNA
Genetic Manipulation Tools
Redesign through Modification of Existing Pathways
ATP 2 Acetate
Acetyl-CoA 2 ADP 2 ATP
Foreign Pathways
Findings
Perspectives
Full Text
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