Abstract

Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been used in the field of clinical microbiology since 2010. Compared with the traditional technique of biochemical identification, MALDI-TOF MS has many advantages, including convenience, speed, accuracy, and low cost. The accuracy and speed of identification using MALDI-TOF MS have been increasing with the development of sample preparation, database enrichment, and algorithm optimization. MALDI-TOF MS has shown promising results in identifying cultured colonies and rapidly detecting samples. MALDI-TOF MS has critical research applications for the rapid detection of highly virulent and drug-resistant pathogens. Here we present a scientific review that evaluates the performance of MALDI-TOF MS in identifying clinical pathogenic microorganisms. MALDI-TOF MS is a promising tool in identifying clinical microorganisms, although some aspects still require improvement.

Highlights

  • The present review aimed to summarize the efficacy of MALDI-TOF MS for pathogen identification in clinical microbiology laboratories, including sample preparation and identification performance of microorganisms

  • MALDI-TOF MS has been applied in clinical liquid samples, including blood culture, urine, cerebrospinal fluid (CSF), and various other body fluids; it is limited by the low number of pathogens and abundance of human cells [39]

  • If a specific protein in pathogenic bacteria is related to antimicrobial resistance, the quality peak of the protein can be detected by MALDI-TOF MS to distinguish sensitive and drug-resistant pathogens

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Summary

Introduction

Clinical microbiology laboratories are constantly expanding the application of MALDI-TOF MS in new areas of infectious disease diagnostics. This review focuses on the efficacy of MALDI-TOF MS in identifying pathogens at the species level in a clinical setting. MALDI-TOF MS has good identification outcomes for common, clinically isolated bacteria [14,15]. New studies have shown remarkable progress in the detection of microorganisms by MALDI-TOF MS and the identification of drug-resistant strains [20,21,22,23,24,25]. The present review aimed to summarize the efficacy of MALDI-TOF MS for pathogen identification in clinical microbiology laboratories, including sample preparation and identification performance of microorganisms. The current problems associated with MALDI-TOF MS in clinical laboratories are discussed

MALDI-TOF MS Basic Overview
Sample Preparation
General Preparation with Laboratory Culture Strains
Liquid Samples
Filamentous Fungi
Aerobe Bacteria Identification
Anaerobic Bacteria Identification
Mycobacterium and Nocardia Identification
Yeast Identification
Filamentous Fungi Identification
Virus Identification
Identification from Positive Blood Cultures
Identification Directly from Patient Urine or CSF
Current Limitations of Microorganism Identification by MALDI-TOF MS
Findings
Conclusions
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